Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1874
         (879 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    42   0.001
AE014297-1133|AAF54518.1| 1436|Drosophila melanogaster CG11872-P...    32   0.91 
X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein pr...    30   3.7  
AY095065-1|AAM11393.1|  257|Drosophila melanogaster RE08418p pro...    30   3.7  
AE014298-1049|AAN09213.1|  257|Drosophila melanogaster CG11387-P...    30   3.7  
AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-P...    30   3.7  

>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
          protein protein.
          Length = 110

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +1

Query: 16 SRRAVAAALELVDPPGCRNSA 78
          S  AVAAALELVDPPGCRNSA
Sbjct: 2  SSTAVAAALELVDPPGCRNSA 22


>AE014297-1133|AAF54518.1| 1436|Drosophila melanogaster CG11872-PA
            protein.
          Length = 1436

 Score = 32.3 bits (70), Expect = 0.91
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 58   PGCRNSAAADPFNLDVSMTHLLNE---NTNNNVKS-TTGSKKSHSPEKNRRNKL 207
            PG   SA+++  +   SM +  N    NTNNN  S T+G + S + E NR N L
Sbjct: 992  PGAMKSASSNNSSSQQSMENATNNNSTNTNNNCSSQTSGYRTSSAHEINRNNPL 1045


>X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein
           protein.
          Length = 2175

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 16  SRRAVAAALELVDPPGCRNSAAADPFNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNR 195
           S + VA++ E  D   C N+      N + S T   N N NNN  S++G+ +    + N 
Sbjct: 369 SEQHVASSAEDDD---CANNNTNTSNNNNTSNTATSNTNNNNNNNSSSGNSEKRKKKNNN 425

Query: 196 RN 201
            N
Sbjct: 426 NN 427


>AY095065-1|AAM11393.1|  257|Drosophila melanogaster RE08418p
           protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 16  SRRAVAAALELVDPPGCRNSAAADPFNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNR 195
           S + VA++ E  D   C N+      N + S T   N N NNN  S++G+ +    + N 
Sbjct: 181 SEQHVASSAEDDD---CANNNTNTSNNNNTSNTATSNTNNNNNNNSSSGNSEKRKKKNNN 237

Query: 196 RN 201
            N
Sbjct: 238 NN 239


>AE014298-1049|AAN09213.1|  257|Drosophila melanogaster CG11387-PB,
           isoform B protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 16  SRRAVAAALELVDPPGCRNSAAADPFNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNR 195
           S + VA++ E  D   C N+      N + S T   N N NNN  S++G+ +    + N 
Sbjct: 181 SEQHVASSAEDDD---CANNNTNTSNNNNTSNTATSNTNNNNNNNSSSGNSEKRKKKNNN 237

Query: 196 RN 201
            N
Sbjct: 238 NN 239


>AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-PA,
           isoform A protein.
          Length = 2175

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 16  SRRAVAAALELVDPPGCRNSAAADPFNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNR 195
           S + VA++ E  D   C N+      N + S T   N N NNN  S++G+ +    + N 
Sbjct: 369 SEQHVASSAEDDD---CANNNTNTSNNNNTSNTATSNTNNNNNNNSSSGNSEKRKKKNNN 425

Query: 196 RN 201
            N
Sbjct: 426 NN 427


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,240,617
Number of Sequences: 53049
Number of extensions: 590580
Number of successful extensions: 1997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)