Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1874
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.30 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    26   0.40 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 112 THLLNENTNNNVKSTTGSKKSHSPEKNRRN 201
           TH +N N N+N+++ T ++  ++ + N++N
Sbjct: 412 THCVNNNQNDNIQN-TNNQNDNNQKNNKKN 440


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  FNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNRRNK 204
           FN D     +L  N NN +K+T  +K ++  + N +NK
Sbjct: 394 FNFDEVNFRILGANVNNLIKNTRCAKSNN--QNNNQNK 429


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 213 PAEFVSPVFLRTVAFFGTGGRLNIVICIFI 124
           P   + P+ L  V  F TG   NI+ CI I
Sbjct: 29  PLTLIVPITLTYVVIFVTGFVGNIITCIVI 58


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/59 (23%), Positives = 20/59 (33%)
 Frame = +1

Query: 25  AVAAALELVDPPGCRNSAAADPFNLDVSMTHLLNENTNNNVKSTTGSKKSHSPEKNRRN 201
           A A  LE        ++  A   N + S  +  N N NNN      +   +    N  N
Sbjct: 211 AGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNN 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,817
Number of Sequences: 438
Number of extensions: 3845
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)