Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1872
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000499AD7 Cluster: Importin alpha subunit; n=1; Ent...    33   6.9  
UniRef50_Q6MDC8 Cluster: UvrABC system protein C; n=1; Candidatu...    33   6.9  
UniRef50_A7QI26 Cluster: Chromosome chr17 scaffold_101, whole ge...    33   9.1  

>UniRef50_UPI0000499AD7 Cluster: Importin alpha subunit; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Importin alpha
           subunit - Entamoeba histolytica HM-1:IMSS
          Length = 515

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = -2

Query: 674 GRLLHRCYTQVRSLDDIISVIIHEDVYLDYIIIGDGNSVEPFKKLINCETFL-ECDPYIE 498
           G L+  C   ++S  D+++++  +D YL +++  D ++ +   +L++C   L E D    
Sbjct: 405 GWLVTNCILSIKSPKDLLTLLSIKDFYLMFMLFFDDDNTKFITQLLSCVFILSEFDQKTN 464

Query: 497 F-*HLIKFLPNN*ITPLLASIRL 432
           F  H+I  L    +  +L+S  L
Sbjct: 465 FCHHIIDNLQERNLDNILSSFEL 487


>UniRef50_Q6MDC8 Cluster: UvrABC system protein C; n=1; Candidatus
           Protochlamydia amoebophila UWE25|Rep: UvrABC system
           protein C - Protochlamydia amoebophila (strain UWE25)
          Length = 610

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 463 QLFGRNFIKCQNSIYGSHSRNVSQLINFLKGSTELPSPIIM*SK*TSSCMITEIISS 633
           +L G    +  N I   H    S L+   +G+TE+PS I++ SK +    + EI+S+
Sbjct: 276 KLVGSRHFEFDNIIEEDHELLTSFLLQHYEGATEIPSEILLPSKISDEHPVEEILSA 332


>UniRef50_A7QI26 Cluster: Chromosome chr17 scaffold_101, whole
           genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_101, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 1276

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 662 HRCYTQVRSLDDIISVIIHEDVYLDYIIIGDGNSVEPFKKLI 537
           H    + +S+DD+ S I H    LD ++ GD N+ +PF++L+
Sbjct: 122 HTYSLEHKSIDDLFSSIFH---CLDVLMEGDANTAKPFQELV 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,239,183
Number of Sequences: 1657284
Number of extensions: 12340143
Number of successful extensions: 27123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27120
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)