Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1872
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.8  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   9.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 14  ESLTWHHLLFIF 49
           E + W HLL+IF
Sbjct: 625 EQIAWLHLLYIF 636


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 708 TIHSSSLSTAAGQTSPSMLYSSSIIRRYYLGYHT 607
           T   + L   AG +SPS  ++  +I+R     HT
Sbjct: 250 TCRDNRLLVLAGTSSPSNRFTRHLIQRRTHTRHT 283


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 423 DNLQPNRC*QRGY 461
           DN  P RC QR Y
Sbjct: 111 DNFLPERCQQRHY 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,760
Number of Sequences: 336
Number of extensions: 3171
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)