Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1872
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    28   6.3  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    28   8.4  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +1

Query: 370 TDL*ASHHINHYNDAMYATTYNLI--DANNGVIQLFGRNFIKCQNS-IYGS-HS 519
           +DL AS H+N++ D + A+ Y+L+   +N  V      +F + +++ I+GS HS
Sbjct: 166 SDLIASLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHS 219


>03_01_0005 +
           46370-46454,46962-47071,47381-47545,47672-48463,
           48730-48840,48935-49195,49415-49638,49735-49855,
           50673-51214,51302-51488,51569-51895,52047-52197,
           52287-52424,52918-53013,53276-53357,54411-54679,
           54769-54882,55050-55288,55488-55715,55799-55951,
           56479-56616,57061-57188,57598-57718,58142-58306,
           59486-59633,59772-59898,60025-60118,60119-60268,
           60577-60624,60712-60819,61040-61114,61225-61275,
           61341-61487,61584-61714,61944-62031,62204-62266,
           62336-62582,62830-62981,63056-63126,63214-63370,
           63520-63687
          Length = 2323

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 190 GANLKMTSKAMAYYLSIVSRTLRRNKEGASLLKAKNFNVDVDMGKIAEN 44
           G  L   SKA A   S++  TL RN++  S L A   N+  D+  +A N
Sbjct: 711 GLLLLPISKATAVLASLLQHTLERNRKSTS-LNALLHNLTWDLSSLALN 758


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,638
Number of Sequences: 37544
Number of extensions: 322275
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)