Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1872
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000262-6|AAN60524.1|  318|Caenorhabditis elegans Lipid deplete...    29   2.5  
AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    27   9.9  

>AF000262-6|AAN60524.1|  318|Caenorhabditis elegans Lipid depleted
           protein 2 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 172 TSKAMAYYLSIVSRTLRRN--KEGASLLKAKNFNVDVDMGKIAENKKQMM 29
           T++A+  +  +  R    N  KEG SLLK KN+ +   +G++     +MM
Sbjct: 20  TAEAVKAFSKVFDRMEETNDDKEGLSLLKLKNYEMTAYLGELTVLMSKMM 69


>AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical
           protein Y71H2B.11 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 266 DNFTKNYRIGRLLYIDVHCIDISPARREPENDLKGNGILFVYCLSNVEKKQGRSLAFESQ 87
           ++FTK +++  +    +   D     ++ + DL  N IL  YC + +E+ + +SLA    
Sbjct: 106 ESFTKLFKLTNVKMDGLTVTDCIRLLKKFDRDLLEN-ILMNYCKNQMEEDEFKSLAEVVN 164

Query: 86  EF*C 75
           EF C
Sbjct: 165 EFNC 168


>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 82  NSWLSKARLLPCFFSTFERQ*TNNMPLPLRSF--SGSR 189
           + + SK++L+  F S FER  ++   +PL++F  SG+R
Sbjct: 462 DDFTSKSKLVQQFTSVFERDWSSTYTIPLKNFTISGNR 499


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 TIDK*YAIAFEVIFRFAPCRRNINTVNVNI 227
           TI + Y  A + IFR+A CRR  N V  +I
Sbjct: 309 TIVREYRNAVKKIFRYACCRRKQNEVKTSI 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,382
Number of Sequences: 27780
Number of extensions: 303648
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)