Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1872
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 388 HHINHYNDAMYATTYNLIDANN 453
           H+ N+YN+  Y   YN  + NN
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNN 345


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 566 NSVEPFKKLINCETFLE 516
           N+ EP   LINC   LE
Sbjct: 273 NTWEPISNLINCSDILE 289


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 203 ISPARREPEN---DLKGNGILFVYCLSNVEKKQGRSLAFESQE 84
           +SP+ R  E    ++KG GI+  Y L   E +   +     QE
Sbjct: 570 LSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQE 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,674
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)