Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1871
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    49   5e-07
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         49   7e-07
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.3  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   4.3  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    26   5.7  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   9.9  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 28/100 (28%), Positives = 54/100 (54%)
 Frame = +2

Query: 29  IFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHL 208
           IF KI++ +IP   + E    +AF D+ P +  H LVIP++   ++    +  ++    +
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKM---HELSDESCADI 60

Query: 209 LIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 328
           L + +KV   +G +   + ++ N+G+   Q V H+H HI+
Sbjct: 61  LPLVKKVTKAIGPE--NYNVLQNNGRIAHQFVDHVHFHII 98


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
 Frame = +2

Query: 56  IPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKV-- 229
           + +   Y  +   AF ++ P  P HVLVIP++ +P+L    D     L  L    RKV  
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKVQQ 68

Query: 230 AAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG*IIVYSNLK 385
             +     +   + + DG +  Q+V H+H+HI+  ++  +     +VYS L+
Sbjct: 69  VIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADFSEN-DLVYSELE 119


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 139 HQYMSRSLWVHIIECYALFVFVNE 68
           H+  S+  W+H I C AL + ++E
Sbjct: 72  HRLFSKDEWMHFITCQALNITLSE 95


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 215 VARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 328
           V  +V  Q  +DK   ++ V+       S YHLH+HIL
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 666 LYKFFFKTKRICLSGDTSNTSK 601
           +YKF FKT R+ LS    +++K
Sbjct: 89  IYKFIFKTARLLLSSTYGSSAK 110


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 155 IPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGG 334
           +P ++LA   +E++L        KV     L K    +  ND           +IH LG 
Sbjct: 330 LPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGV 389

Query: 335 R 337
           R
Sbjct: 390 R 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,829
Number of Sequences: 5004
Number of extensions: 50675
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)