Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1871
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...   100   1e-21
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    96   2e-20
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    57   1e-08
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701     33   0.27 
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364...    29   2.6  

>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score =  100 bits (239), Expect = 1e-21
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
 Frame = +2

Query: 5   TAAPGGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSLAD 178
           TA  GG TIF KI+ KEIP+N +YEDE+ +AF D+NPQAP HVLVIP  R  +  L  A+
Sbjct: 38  TADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDKAE 97

Query: 179 DTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHI 319
               ++LG+LL  A+ VA + G+ + G+R+V+N   NG + +Y LHI
Sbjct: 98  PRHVEILGYLLYAAKIVAEKEGIAE-GYRVVIN---NGPKGLYMLHI 140


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 43/94 (45%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = +2

Query: 20  GDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQ 193
           G  +F KI++KEIP+  +++DE+ +AF D+NPQAPTH+++IP  +  +  LS A++   +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251

Query: 194 LLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGA 295
           +LG+LL VA+ VA Q GL+  G+R+V+NDG +G+
Sbjct: 252 ILGYLLYVAKVVAKQEGLE-DGYRIVINDGPSGS 284


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +2

Query: 17  GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQL-SLADDTDEQ 193
           G   +F +I++   PA  +YED+ C+   D  P +  H L+IP++  P L +        
Sbjct: 70  GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAA 129

Query: 194 LLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQ 340
           +   L +++  +      D   F ++VN+GK   Q ++H H+H++  R+
Sbjct: 130 ICCKLPLISSAIVKATQCD--AFNVLVNNGKVAGQVIFHTHVHLIPRRK 176


>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
          Length = 204

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 181 IISQRELWNRLPWYH----QYMSRSLWVHIIECYALFVFVNEICRDFFT*YFPKD 29
           I+  REL+  LP        YM R L +H +  Y L +    IC  FF+ + PK+
Sbjct: 123 ILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177


>04_03_0594 -
           17733827-17735085,17735576-17735642,17736379-17736413,
           17736810-17737665
          Length = 738

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 227 VAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILG 331
           +A Q G   TGF+L  ND  NG  ++   ++ +LG
Sbjct: 27  IAGQPGCAMTGFKLSCNDTGNGVPTLLLRNVEVLG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,694
Number of Sequences: 37544
Number of extensions: 324090
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)