Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1871
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...   157   5e-39
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    61   8e-10
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    61   8e-10
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score =  157 bits (382), Expect = 5e-39
 Identities = 69/112 (61%), Positives = 92/112 (82%)
 Frame = +2

Query: 23  DTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLG 202
           DT+FGKI+RKEIPA  I+ED++ +AF+DV+PQAP H LVIP++ I  L  A D+D  L+G
Sbjct: 20  DTLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIG 79

Query: 203 HLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG 358
            L++ A KVA QLG+   G+R+VVN+GK+GAQSV+HLH+H+LGGRQ+QWPPG
Sbjct: 80  KLMVTASKVAKQLGM-ANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +2

Query: 38  KILRKEIPANFI-YEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLI 214
           K  R  IPA+ I Y       F ++ P    HVLV P++ +P+L+  D TD +    L I
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLT--DLTDAET-ADLFI 356

Query: 215 VARKVAAQLGL--DKTGFRLVVNDGKNGAQSVYHLHIHILGGR 337
           VA+KV A L    + T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 357 VAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +2

Query: 38  KILRKEIPANFI-YEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLI 214
           K  R  IPA+ I Y       F ++ P    HVLV P++ +P+L+  D TD +    L I
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLT--DLTDAET-ADLFI 356

Query: 215 VARKVAAQLGL--DKTGFRLVVNDGKNGAQSVYHLHIHILGGR 337
           VA+KV A L    + T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 357 VAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +2

Query: 77  EDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKT 256
           E++ CV  ND+ P+A  H LV+ ++ I + +     D  LL  +    R++  +  L K 
Sbjct: 27  ENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLRE-HLKKK 85

Query: 257 GFRLVVNDG-KNGAQ-----SVYHLHIHIL 328
           G    V D  + G       SV+HLH+HI+
Sbjct: 86  GEADTVEDMLRIGFHLPPLLSVHHLHMHII 115


>Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical
           protein F26E4.9 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 527 PQIIQDHFEIILVTCLCKTDLLILNCLTISTKD 429
           P ++  H++  ++ C+C+ D   +N +TI   D
Sbjct: 80  PNLVPSHYDFRIIGCMCEQDSGHVNFMTIRKGD 112


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 155  IPQLSLADDTDEQLLGHLLIVARKVAAQL 241
            +PQL + +DTDE  L  LL+   K AA +
Sbjct: 1123 LPQLDVDEDTDEYRLRRLLLFGLKPAANV 1151


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/82 (23%), Positives = 31/82 (37%)
 Frame = +2

Query: 65  NFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLG 244
           NF+  DE+C+  N      PT      R     L++    + Q +   L + +     LG
Sbjct: 144 NFVLIDEKCLQLNTTLYSKPTAEATCNRLGATLLTIQSSEENQKIQSFLSIHQISQIWLG 203

Query: 245 LDKTGFRLVVNDGKNGAQSVYH 310
           L   G  +      NG+   Y+
Sbjct: 204 LICNGKSVTSCQWDNGSNVTYY 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,789
Number of Sequences: 27780
Number of extensions: 290571
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)