Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1870
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical ...    29   2.6  
U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021487-7|CAA16359.1|  221|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical
           protein K08D12.3a protein.
          Length = 151

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 513 GGGCFMCQRRGHYSR 557
           GG C+ C  RGHYSR
Sbjct: 66  GGSCYNCGGRGHYSR 80


>U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical
           protein F02E8.2a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 328 LFRIIVCSFKVTSTVL*DCMNKNTVFRLNIFPV 230
           LF II C F++  T    C+  N  +  NIFPV
Sbjct: 261 LFFIIYCYFRILGTRHFLCITVNLSYTSNIFPV 293


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 293 SYFKATYNDSK*MVCDALYLCLLNTHRTCLLKVLPFHHIYKWILH 427
           +Y+K TY       C+ L + ++    +C+L V+ F    KW LH
Sbjct: 316 AYWKLTYGGDS--YCE-LGILIVALAASCILAVISFEGFEKWYLH 357


>AL021487-7|CAA16359.1|  221|Caenorhabditis elegans Hypothetical
           protein Y45F10B.12 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 197 LKNLSCSYITIHRENI-ESKYCIFIHTILKHG 289
           LKN+ C  I++H+  + E++   FIH  LK G
Sbjct: 97  LKNMKCQLISVHQNTLTENQTNEFIHHWLKGG 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,927
Number of Sequences: 27780
Number of extensions: 281639
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)