Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1870
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 568 WSPSRE*WPRRWHMKQPPPNTLASR 494
           W P R  WP  W ++   P+T+  R
Sbjct: 574 WEPPRALWPTEWKVR---PSTVEER 595


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 455 LFIHLFYE*SVKSIYKYDEMVKLSTSRCGVCSVNINIVRHR 333
           +FI LFY   + SI  +++M++    +  V S+  N  + R
Sbjct: 234 IFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKER 274


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 455 LFIHLFYE*SVKSIYKYDEMVKLSTSRCGVCSVNINIVRHR 333
           +FI LFY   + SI  +++M++    +  V S+  N  + R
Sbjct: 234 IFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKER 274


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 98  SCIGEAEWDQKEKGQENRKASSAVRSFVQKASVLKNLSCS 217
           SC  +   + KEK +   K  +     +++ +  K  SCS
Sbjct: 236 SCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSCS 275


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 146 NRKASSAVRSFVQKASVLKN 205
           NR+ +SAV+S +Q    LK+
Sbjct: 729 NRQVNSAVKSTIQSLMKLKS 748


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 HNTQGKY*VEILYFYSYNLKAR 288
           HN +G + V+I+Y+     +AR
Sbjct: 287 HNIEGTHYVKIVYYLGIPSEAR 308


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 HNTQGKY*VEILYFYSYNLKAR 288
           HN +G + V+I+Y+     +AR
Sbjct: 302 HNIEGTHYVKIVYYLGIPSEAR 323


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 506 TRVPAWAGRRLSTAMQNLFI 447
           TRVPAW  R L      + +
Sbjct: 335 TRVPAWCDRVLLNPTDKMLV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,197
Number of Sequences: 438
Number of extensions: 3589
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)