Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1868
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   1.8  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    27   2.4  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   5.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.7  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.7  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 211 EVGPG*GGTLLCSTYYARGGCTAQHPLAIF 300
           + G G  GT++CS   A GG TA+  L ++
Sbjct: 130 KAGKGRTGTVICSYLVAFGGLTAKQSLELY 159


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 222 RVGRDAALFDVLRPRRLYRAASARHLPTRTYIKTYSGYPVSTYILAETI 368
           + GRD A   VLR +R++       L  +   KTY G  V++  ++ET+
Sbjct: 23  KYGRDTAFIPVLRHKRVHEEQLRDKL--KNVRKTYCGLIVTSQRVSETL 69


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 294 HLPTRTYIKTYSGYPVSTYILAETILVTNQTLI 392
           H P  ++    SGYPV  + L+E + + + T+I
Sbjct: 71  HTPGESFADNASGYPVIKHELSELLRLGSPTVI 103


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 451  LKIGESVFVNNSDICNYY 398
            LK+   VF +N D CN+Y
Sbjct: 2168 LKVTLQVFKSNEDTCNFY 2185


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  KRASHAPILNCIPS 66
           KR SH+P+L C PS
Sbjct: 438 KRKSHSPVLVCAPS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,188
Number of Sequences: 5004
Number of extensions: 51789
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)