Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1868
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0016 - 10623796-10625317,10626493-10627541                       29   4.3  
09_04_0629 - 19098087-19098516,19099120-19099370                       28   5.7  
12_02_0821 + 23443733-23444425                                         28   7.6  

>06_02_0016 - 10623796-10625317,10626493-10627541
          Length = 856

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 231 RDAALFDVLRPRRLYRAASARHLPTRTYIKTYSGYPVSTYILAETILVT 377
           R   + DVL     Y A S R LP+  Y+ T     +STY+    I  T
Sbjct: 123 RTVMVLDVLALMAAYAAGSCRDLPSTVYVSTLV-VALSTYLAIRIIYQT 170


>09_04_0629 - 19098087-19098516,19099120-19099370
          Length = 226

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 200 NGGRKWVPGRAGRCFVRRTTPAEAVPRSI-RSPSSYS 307
           + G  ++PGR GR F R TT + + P S  RSP+S S
Sbjct: 38  DNGELYLPGR-GRRFARGTTSSSSEPASSGRSPTSPS 73


>12_02_0821 + 23443733-23444425
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 188 GKRCNGGRKWVPGRAGRCFVRRTTP--AEAVPRSIRSPSSYSHLY 316
           G  C G  ++  GR   C   RTTP   E VP+S RSP     ++
Sbjct: 163 GAACRGPPEYFKGR---CPQTRTTPGDVEPVPQSCRSPGELKVIF 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,863
Number of Sequences: 37544
Number of extensions: 325767
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)