Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1868
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ786330-1|ABH04238.1|  278|Homo sapiens CD6deltaD3Ex6 protein.        31   2.8  
BC078669-1|AAH78669.1|  668|Homo sapiens CD6 molecule protein.         31   2.8  
AL031729-5|CAI19619.1| 1603|Homo sapiens AT hook, DNA binding mo...    30   8.4  

>DQ786330-1|ABH04238.1|  278|Homo sapiens CD6deltaD3Ex6 protein.
          Length = 278

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 231 ALPGTHFLP---PLHRFPVNYPAAQFHEWN 151
           ALPG HF+P   P+HR  VN   A+ + W+
Sbjct: 210 ALPGLHFMPGRGPIHRDQVNCSGAEAYLWD 239


>BC078669-1|AAH78669.1|  668|Homo sapiens CD6 molecule protein.
          Length = 668

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 231 ALPGTHFLP---PLHRFPVNYPAAQFHEWN 151
           ALPG HF+P   P+HR  VN   A+ + W+
Sbjct: 210 ALPGLHFMPGRGPIHRDQVNCSGAEAYLWD 239


>AL031729-5|CAI19619.1| 1603|Homo sapiens AT hook, DNA binding motif,
            containing 1 protein.
          Length = 1603

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
 Frame = +3

Query: 153  SIHETVPRDS*PENGVTEAGSGSRVGRDAALFDVLRPRRLYRAAS-ARHLPTRTYIKTYS 329
            S  +T P       G+T A S  R    A  F  L P     A S   H P  TY+  Y 
Sbjct: 916  SARQTFPPGRAASYGLTPAASDCRA---AETFPKLVPPPSAMARSPTTHPPANTYLPQYG 972

Query: 330  GYPVSTYILAETILVTNQ 383
            GY     + A T   T Q
Sbjct: 973  GYGAGQSVFAPTKPFTGQ 990


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,312,257
Number of Sequences: 237096
Number of extensions: 1807859
Number of successful extensions: 3462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)