Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1868
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029105-1|ABJ17038.1|  397|Drosophila melanogaster IP14616p pro...    28   9.8  
AY113450-1|AAM29455.1|  378|Drosophila melanogaster RE33150p pro...    28   9.8  
AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH0558...    28   9.8  
AE013599-3031|AAF57455.1|  411|Drosophila melanogaster CG13424-P...    28   9.8  
AE013599-714|AAM68837.1|  985|Drosophila melanogaster CG8740-PC,...    28   9.8  
AE013599-713|AAM68836.1|  985|Drosophila melanogaster CG8740-PB,...    28   9.8  
AE013599-712|AAF59045.1|  985|Drosophila melanogaster CG8740-PA,...    28   9.8  

>BT029105-1|ABJ17038.1|  397|Drosophila melanogaster IP14616p
           protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 311 GASRKMASGCCAVQPPRA*YVEQSSVPPYPGPT 213
           G++  MAS   A   P   Y     +PP PGP+
Sbjct: 216 GSAAPMASATTATGSPMRPYATSGGMPPLPGPS 248


>AY113450-1|AAM29455.1|  378|Drosophila melanogaster RE33150p
           protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 311 GASRKMASGCCAVQPPRA*YVEQSSVPPYPGPT 213
           G++  MAS   A   P   Y     +PP PGP+
Sbjct: 197 GSAAPMASATTATGSPMRPYATSGGMPPLPGPS 229


>AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH05582
            protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 165  TVPRDS*PENGVTEAGSGSRVGRDAALFDVLRPRRLYRAASARHLP 302
            T+PR   P NG T A + SR GR     D   P R Y   S    P
Sbjct: 926  TLPRKPPPHNGATSASTLSRTGRKN---DSSTPTRRYHMDSLERPP 968


>AE013599-3031|AAF57455.1|  411|Drosophila melanogaster CG13424-PA
           protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 311 GASRKMASGCCAVQPPRA*YVEQSSVPPYPGPT 213
           G++  MAS   A   P   Y     +PP PGP+
Sbjct: 230 GSAAPMASATTATGSPMRPYATSGGMPPLPGPS 262


>AE013599-714|AAM68837.1|  985|Drosophila melanogaster CG8740-PC,
            isoform C protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 165  TVPRDS*PENGVTEAGSGSRVGRDAALFDVLRPRRLYRAASARHLP 302
            T+PR   P NG T A + SR GR     D   P R Y   S    P
Sbjct: 926  TLPRKPPPHNGATSASTLSRTGRKN---DSSTPTRRYHMDSLERPP 968


>AE013599-713|AAM68836.1|  985|Drosophila melanogaster CG8740-PB,
            isoform B protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 165  TVPRDS*PENGVTEAGSGSRVGRDAALFDVLRPRRLYRAASARHLP 302
            T+PR   P NG T A + SR GR     D   P R Y   S    P
Sbjct: 926  TLPRKPPPHNGATSASTLSRTGRKN---DSSTPTRRYHMDSLERPP 968


>AE013599-712|AAF59045.1|  985|Drosophila melanogaster CG8740-PA,
            isoform A protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 165  TVPRDS*PENGVTEAGSGSRVGRDAALFDVLRPRRLYRAASARHLP 302
            T+PR   P NG T A + SR GR     D   P R Y   S    P
Sbjct: 926  TLPRKPPPHNGATSASTLSRTGRKN---DSSTPTRRYHMDSLERPP 968


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,509,163
Number of Sequences: 53049
Number of extensions: 553822
Number of successful extensions: 1245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)