Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1868
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      28   5.1  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 222 GTHFLPPLHRFPVNYPAAQFHEWNKHLNLFKKYVAS 115
           GT   P L+    N P   FH  NK  N+F+  V S
Sbjct: 413 GTEVEPILNELWTNAPPPTFHRTNKFTNVFQSIVDS 448


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 307 RVGRWRADAARYSLRGRSTSNKAASRPTRDPLPASVT 197
           R G     ++R   R R+T++  A  P+R P P+S +
Sbjct: 361 RAGHQTGSSSRLESRSRATASVGARAPSRAPAPSSTS 397


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 222 GTHFLPPLHRFPVNYPAAQFHEWNKHLNLFKKYVAS 115
           GT   P L+    N P   FH  NK  N+F+  V S
Sbjct: 413 GTEVEPILNELWTNAPPPTFHRTNKFTNVFQSIVDS 448


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 436 SVFVNNSDICNYYLNIKVWFVTKIVSAKI 350
           +VF+N+ DICN  L+    F+ K V   I
Sbjct: 481 TVFINSQDICNLKLHAYFQFLNKRVKINI 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,457
Number of Sequences: 27780
Number of extensions: 292593
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)