Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1865
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    33   0.058
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    30   0.41 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.95 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   1.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   6.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 19/79 (24%), Positives = 39/79 (49%)
 Frame = +3

Query: 162 LRSSIQTQTAESRQVKLSRRPTGRFSPSWRKKTVVSRLMRRTPRSLPSTVGRAPTHH*YP 341
           L++S+++   ++ Q   S+R   +  P W     VS+L++ TP ++   +    T   +P
Sbjct: 158 LKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTTSFFP 217

Query: 342 SLPPQAQVMRSKRAQLLGL 398
           S    + V+   + +LL L
Sbjct: 218 SPENSSFVLCLHKDELLCL 236


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 413 LWSLWGR-LVSNWESEWKRRNQWVRDLVRQGVPHHFRGIVWQLLAGVDTSPEKKLYASYI 589
           L ++W R ++ NW    K        + RQG+P   RG VW+   G +    K  Y S+ 
Sbjct: 187 LVNVWEREILRNWPDALKSSRY--AGIWRQGIPSRVRGRVWEKAIGNNL---KLDYQSFF 241

Query: 590 KAKSACEK 613
            A++  +K
Sbjct: 242 NARANAQK 249


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 479 VRDLVRQG---VPHHFRGIVWQLLAGVDTSPEKKLYASYIKAKSACEKVIRRDIASHIFR 649
           + +L++Q    +P   R +VWQ L   + +    LYA+     ++ +  IR+ I    FR
Sbjct: 160 ILELIKQNNFCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSLDSSIRKIIRMQSFR 219


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 41  IIVLRINIGVSVPGSCEESNYLINLVLF*YLMTDRASTEKSPELNPNADCRIPTS 205
           ++  R+N+  SV G  E    +I +    +   + +S   SP + PNA    P+S
Sbjct: 394 LLASRLNLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSS 448


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 423 SGVASSATGNRNGNVETNGS 482
           SG+AS A GNR GN+  N S
Sbjct: 72  SGLASGAFGNRTGNMNRNTS 91


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 210 VSLVGIRQSAFGLSSGDFSVEARSVIKYQN 121
           +S  GI+QS FG  +G   V+   V+K  N
Sbjct: 460 ISFGGIKQSGFGKEAGRLGVQEFMVVKEIN 489


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 183 QTAESRQVKLS-RRPTGRFSPSWRKKTVVSRLMRRTPRSLPSTVGRA 320
           Q  E R VK   RRP  R +P++ +  V+   MRR  +   +T GRA
Sbjct: 347 QPWEKRSVKPEIRRP--RLNPNFFRVFVLEAQMRRAGKLSANTAGRA 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,399
Number of Sequences: 5004
Number of extensions: 67247
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)