Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1865
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 40 0.002
07_03_1556 + 27692770-27694119 32 0.43
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 31 1.3
08_02_1295 + 25950284-25950567,25950703-25950793 30 1.7
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 30 1.7
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.0
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 5.3
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 29 5.3
03_05_0431 + 24221881-24224586 29 5.3
03_02_0816 + 11487811-11488708,11488835-11489235 29 5.3
12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948... 28 7.0
11_02_0043 - 7690506-7691726 28 7.0
02_05_1024 + 33582921-33583309,33583381-33583444 28 7.0
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 28 9.2
03_03_0244 - 15772156-15773964,15774190-15774711 28 9.2
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 9.2
02_01_0402 - 2934074-2937217 28 9.2
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 9.2
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 636 RTYSEHDFFKEKDGLGQESLFNVMKAYS 719
RT+ H FF+++ G GQ SL+NV+KAYS
Sbjct: 157 RTFPSHIFFQQRHGPGQRSLYNVLKAYS 184
Score = 39.5 bits (88), Expect = 0.003
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Frame = +2
Query: 425 WGRLVSNWESEWK---RRNQWV-RDLVRQGVPHHFRGIVWQLLAGVD--TSPEKKLYAS- 583
W +++ S+WK RRN V + +R+G+P RG+VWQL++G +Y +
Sbjct: 80 WRKMIGVGGSDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETL 139
Query: 584 YIKAKSACEKVIRRDIA----SHIF 646
I SA E I RDI+ SHIF
Sbjct: 140 VIYETSASELEIIRDISRTFPSHIF 164
>07_03_1556 + 27692770-27694119
Length = 449
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 424 LGSPRQQLGIGMETSKPMGPRPCS--TGCPTS 513
LG+P QQL + ++TS PCS GCPTS
Sbjct: 113 LGTPAQQLLLAVDTSNDAAWIPCSGCAGCPTS 144
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 488 LVRQGVPHHFRGIVWQLLAGVDTSPEKKLYASYIKA 595
LVR G+P RG +WQ G+ K Y S + A
Sbjct: 202 LVRDGLPMALRGELWQAFVGIGARRVKGYYESLLAA 237
>08_02_1295 + 25950284-25950567,25950703-25950793
Length = 124
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 461 KRRNQWVRDLVRQGVPHHFRGIVWQLLAGVDTSP 562
K N WV DL + PH +V QL+A +D SP
Sbjct: 61 KENNVWVGDLALETNPHITVALVEQLVAFMDRSP 94
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 403 RRG--SLEPLGSPRQQLGIGMETSKPMGPRPCSTGCPTSFQRHRMAATGRRRHVARKEVI 576
RRG SL LG+ + + IGM T + P P F RH + AT + ++ + +
Sbjct: 36 RRGGYSLIVLGAKKLRQTIGMGTPQDRAPTPYENDKALHFLRHHLCATLKNEYMGLRSPL 95
Query: 577 RL 582
L
Sbjct: 96 TL 97
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 443 NWESEWKRRNQWVRDLVRQGVPHHFRGIVWQLLAGV 550
N ES + R + + LVR GVP RG +WQ GV
Sbjct: 314 NGESYFPWREE-LESLVRGGVPMALRGEMWQAFVGV 348
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 228 GRFSPSWRKKTVVSRLMRRTPRSLPS 305
G PSW K VS+ RTPR P+
Sbjct: 1946 GNGKPSWLKSKSVSKSTTRTPRDFPA 1971
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 488 LVRQGVPHHFRGIVWQLLAGVDTSPEKKLYASYIKAKSACE 610
LV G+P RG +WQ G+ K Y S + A+ E
Sbjct: 190 LVHGGLPMALRGELWQAFVGIGVRRVKGYYDSLLVAEGELE 230
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 442 QLGIGMETSKPMGPR---PCSTGCP-TSFQRHRMAATGRR 549
++G G +T KP R PCS GCP S++ AT R
Sbjct: 348 EVGSGSKTCKPANSRLCLPCSVGCPDDSYESSPCNATADR 387
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 237 SPSWRKKTVVSRLMRRTPRSLPSTVGRAPTHH*YPSLPPQAQVMRSKRAQLLGLMEK 407
SP +V+RLM + PS P PP + KR +LLG +EK
Sbjct: 121 SPRPTPPAIVARLMGLEESAPPSPAATTPRPLPTRPPPPPPETAAEKRRKLLGALEK 177
>12_02_0704 -
22293955-22294255,22294276-22294602,22294794-22294840,
22297252-22297316,22297439-22297541
Length = 280
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 424 LGSPRQQLGIGMETSKPMGPRPCSTGCPTSFQRHRMAATGRRRHVARKEVIRL 582
LG+ + GM T + P P F RH + AT + H+A K ++ L
Sbjct: 102 LGAKKLLKTFGMGTVQEPMPTPDENDQAMYFLRHHLCATLKNEHMATKGLLTL 154
>11_02_0043 - 7690506-7691726
Length = 406
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 197 PTSETIPTPDRALLAKLEEENRRIEA 274
PT+ P PDRALLA +E R A
Sbjct: 29 PTAAAAPVPDRALLADIEAAVERCTA 54
>02_05_1024 + 33582921-33583309,33583381-33583444
Length = 150
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 400 WRRGSLEPLGS---PRQQLGIGMETSKPMGPRPCSTGCPTSFQRH 525
W S P+G R L G + K P PCS GCP R+
Sbjct: 15 WGLNSKPPVGDGGEARGALSFG-KVGKAPPPGPCSAGCPRELPRY 58
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 555 RRPKRSYTPHILRRN-----QPARRSYVVTSLRTYSEHDFFK 665
R RSYTP RR PARRS + R+YS D+ K
Sbjct: 294 RSRSRSYTPDDYRRRGRDSVSPARRSLSRSRSRSYSPDDYRK 335
>03_03_0244 - 15772156-15773964,15774190-15774711
Length = 776
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 312 GRAPTHH*YPSLPPQAQVMRSKRAQLLGLMEKRIFGASGVASSATGNRNGNVETNGSATL 491
G+APT H PSLP ++ + L +K S + + N + N TN S L
Sbjct: 46 GQAPTGHTVPSLPDTVSKLKPAQESDDSLKDKTDLPTS-TSKTEVNNISENGSTNQSTML 104
Query: 492 FD 497
D
Sbjct: 105 SD 106
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 289 LAHYRPQSEELRHITDIPRFRHKLKS 366
+ ++R +SE L+H D+PR HKL+S
Sbjct: 357 IGYHRCKSELLQHGDDLPRKFHKLQS 382
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 609 SQADFALIYEAYNFFSGDVSTPASSCHTMPL 517
S FAL+ +YN FSG + S+C T+ L
Sbjct: 202 SAPSFALLDISYNQFSGGIPPGLSNCSTLTL 232
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 410 DLWSLWGRLVSNWESEWKRRNQWVRDLVRQGVPHHFRGIVWQLLA 544
DL+ L GR +S W+S + DL G+ F + W LA
Sbjct: 1430 DLYVLQGRQISEWQSVLTTVLELPLDLAFYGLAKKFLVVFWVFLA 1474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,353,231
Number of Sequences: 37544
Number of extensions: 491784
Number of successful extensions: 1430
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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