Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1865
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 229 GASRQAGGRKPSYRG*CEERLAHYRPQSEELRHITD 336
           G +R    R+PS R  CE ++        EL  +T+
Sbjct: 394 GINRVGSTRRPSRRNSCESQMMGDEMSLRELTQVTE 429


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 515 NDVGHPVEQGRGPIGF 468
           ND+    EQ  GP+GF
Sbjct: 42  NDIAKECEQFLGPVGF 57


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 672 LSL*RNRVRNMCEAMSRRMTFSQADFALIYEAY 574
           L +  N  +NM +     +TF   D+  +Y  Y
Sbjct: 409 LGIINNIFKNMSQIEREAITFQYTDWEEVYNGY 441


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 672 LSL*RNRVRNMCEAMSRRMTFSQADFALIYEAY 574
           L +  N  +NM +     +TF   D+  +Y  Y
Sbjct: 409 LGIINNIFKNMSQIEREAITFQYTDWEEVYNGY 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,206
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)