Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1864
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 118 6e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 61 1e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 56 3e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 1e-07
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 43 3e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.030
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 1.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 3.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 3.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 6.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 118 bits (283), Expect = 6e-28
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = -1
Query: 481 KKEITALAPLPMKIKIIAPPERKYSVWIGGSILASLSTFHQMWISKQEYDESGPSIVHRK 302
+KEI ALAP MK+KI+APPERKYSVWIGGSILASLSTF QMWISKQEYDESGP IV+RK
Sbjct: 314 QKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRK 373
Query: 301 CF 296
CF
Sbjct: 374 CF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.9 bits (141), Expect = 1e-10
Identities = 24/44 (54%), Positives = 35/44 (79%), Gaps = 3/44 (6%)
Frame = -1
Query: 421 ERKYSVWIGGSILASLSTFHQMWISKQEYDESGP---SIVHRKC 299
ER Y+ W+GGSIL+SL TFHQ+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 56.0 bits (129), Expect = 3e-09
Identities = 25/60 (41%), Positives = 43/60 (71%)
Frame = -1
Query: 475 EITALAPLPMKIKIIAPPERKYSVWIGGSILASLSTFHQMWISKQEYDESGPSIVHRKCF 296
E+ A++ ++KI A PER ++ W+GGSILASLSTF ++ I+ +EY ++ +++ R+ F
Sbjct: 321 ELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.4 bits (115), Expect = 1e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = -1
Query: 409 SVWIGGSILASLSTFHQMWISKQEYDESG 323
+VW GGSILASL F +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = -1
Query: 460 APLP-MKIKIIAPPERKYSVWIGGSILASLSTFH-QMWISKQEYDESG 323
A LP K+KI P R+++V+IGG++LA + + MW+SK E++E G
Sbjct: 331 ARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 442 IKIIAPPERKYSVWIGGSILASLSTFHQMWISKQEYDESGPSIVHR 305
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 32.7 bits (71), Expect = 0.030
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 481 KKEITALAPLPMKIKIIAPPERKYSVWIGGSILASLSTFHQMWISKQEYDESGPSIV 311
K+E+T++ P+ I + W G S + F ++++EY E GP +
Sbjct: 655 KRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 403 WIGGSILASLS---TFHQMWISKQEYDESGPSIVHRK 302
++GGSI+A S + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 376 LSTFHQMWISKQEYDESGPSIV 311
L +++ W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 411 TPYGSVDRSSPPSLPSTRCGSRNRSTTSLAPP 316
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 344 FRDPHLVEGREGGEDRSTDPYGVLSLWRS 430
F HL+ + G+D + + YG LS W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 442 IKIIAPP---ERKYSVWIGGSILASLSTFHQMWISKQEYDESGPSIVHRK 302
I +I PP + ++ W G I + ++WI ++ G ++ K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,088
Number of Sequences: 5004
Number of extensions: 31551
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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