Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1864
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              86   2e-19
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 85.8 bits (203), Expect = 2e-19
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = -1

Query: 481 KKEITALAPLPMKIKIIAPPERKYSVWIGGSILASLSTFHQMWIS 347
           +KEITALAP  MKIKIIAPPE+KYSVWIGGSILASLSTF QMWIS
Sbjct: 89  QKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 5/22 (22%), Positives = 11/22 (50%)
 Frame = +2

Query: 245 IEQPAAGCWRQRRAVRLETLPV 310
           +   A GCW + R ++   + +
Sbjct: 319 VSDTALGCWNENRPLKRRNIEI 340


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 309 CTMEGPDSSYSCFEIHIWWK 368
           CT+E     Y+  ++ ++WK
Sbjct: 175 CTVEIESYGYTVLDVVMYWK 194


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 RSTDPYGVLSLWRSNDLNLHWQW 457
           R+ D  G+L   R ++L+  +QW
Sbjct: 205 RAEDARGILEAARRSNLSQPFQW 227


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 RSTDPYGVLSLWRSNDLNLHWQW 457
           R+ D  G+L   R ++L+  +QW
Sbjct: 295 RAEDARGILEAARRSNLSQPFQW 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,885
Number of Sequences: 438
Number of extensions: 2667
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)