Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1863
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 165 1e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 82 2e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 1e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 2e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 1e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 1e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.42
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 27 0.73
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 27 0.97
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 1.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 1.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 3.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 3.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 3.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 3.9
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 3.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 3.9
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 3.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 3.9
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 24 5.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 24 5.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 24 5.2
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 24 5.2
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 24 6.8
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 24 6.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 23 9.0
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 9.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 23 9.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 23 9.0
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 23 9.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 23 9.0
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 23 9.0
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 23 9.0
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 23 9.0
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 23 9.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 23 9.0
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 23 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 165 bits (402), Expect = 1e-42
Identities = 79/100 (79%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Frame = -2
Query: 325 TYNSHHEVRRETSVRT-LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 149
TYNS ++ + +R LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPER
Sbjct: 278 TYNSI--MKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPER 335
Query: 148 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 29
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 81.8 bits (193), Expect = 2e-17
Identities = 37/84 (44%), Positives = 60/84 (71%)
Frame = -2
Query: 280 TLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 101
TLY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLST
Sbjct: 297 TLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLST 356
Query: 100 FQQMWISKQEYDESGPSIVHRKCF 29
F+++ I+ +EY ++ +++ R+ F
Sbjct: 357 FRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.2 bits (179), Expect = 1e-15
Identities = 37/89 (41%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Frame = -2
Query: 280 TLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILAS 110
+L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+S
Sbjct: 345 SLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSS 403
Query: 109 LSTFQQMWISKQEYDESGP---SIVHRKC 32
L TF Q+WIS+QEY+E G +++ ++C
Sbjct: 404 LGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 2e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -2
Query: 277 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 104
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 103 TFQQMWISKQEYDESG 56
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 59.3 bits (137), Expect = 1e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -2
Query: 277 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 131
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 130 GGSILAS-LSTFQQMWISKQEYDESG 56
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.2 bits (112), Expect = 2e-07
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Frame = -2
Query: 277 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYS 140
LY N VLSGG+T++ +R+Q+++ + + + +I+ ++ +
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNA 385
Query: 139 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 38
VW GGS+LA F +K +Y+E G SI R
Sbjct: 386 VWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 1e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -2
Query: 277 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 98
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 97 QQMWISKQEYDESGPSIVHRK 35
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 1e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -2
Query: 277 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 98
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 97 QQMWISKQEYDESGPSIV 44
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 1e-05
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = -2
Query: 295 ETSVRTLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGG 125
+ + LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G
Sbjct: 523 DEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGA 582
Query: 124 SILASLSTFQQMWISKQEYDESGPSIVHRK 35
I + ++WI ++ G ++ K
Sbjct: 583 CIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.42
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 136 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 35
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.1 bits (57), Expect = 0.73
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 123 RSSPPSLPSNKCGSRNRSTTSLAPPLYTGSASK-RTARQLPP 1
R PP L NK S + T PP G S+ A +LPP
Sbjct: 22 RPIPPVLDMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPP 63
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 0.97
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 143 LRMDRWIDPRLPLYLPTNVDLETGVRRVWPLHCTQEVLLNAPRVS 9
L M R +D + + +P D+ G R + H + EV+LN PRVS
Sbjct: 36 LVMTRMLDGKTEV-IPLTTDVHNGFWR-FGRHKSCEVVLNGPRVS 78
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 328 PTYNSHHEVRRETSVRTLYANTVLSGGTTMYPGIADRMQKEI 203
PT + +T +LY++ S T + GI DR++K +
Sbjct: 520 PTDILSKSIDNQTIYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 211 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 101
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 138 YGSVDRSSPPSLPSNKCG--SRNRSTTSLAP 52
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 77 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 163
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 138 YGSVDRSSPPSLPSNKCG--SRNRSTTSLAP 52
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 3.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 254 RWYHNVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTNVDLET 75
RWY PW + KG+ + +E + SSR + + W+D YL + +D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 74 GV 69
V
Sbjct: 534 AV 535
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 105 LPSNKCGSRNRSTTSLAPPLYTGSAS 28
+P + STT + PPL T S+S
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS 56
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 109 LSTFQQMWISKQEYDESGPSIV 44
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 155 WRSNDLNLHCRWGESCD 205
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 144 TPYGSVDRSSPPSLPSNKCGSRNRSTTSLAPP 49
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 150 GSTPYGSVDRSSPPSLPSNKCGSRNRSTTSLAPPLYTGSASKRTARQLPP 1
GST + D P+LP ++ S R+T S A Y +S + + PP
Sbjct: 21 GSTNWAD-DIDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPP 69
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 5.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 229 FQGTLWYHRTIRCW 270
F+ WY R I CW
Sbjct: 179 FENVQWYFRYINCW 192
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 137 MDRWIDPRLPLYLPTNVDLETGVR 66
+D W+ +L YL T + ETGV+
Sbjct: 188 VDNWLQDKLKHYLTTCLCRETGVQ 211
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 5.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 147 STPYGSVDRSSPPSLPSNKCGSRNRS-TTSLAP--PLYTGSASKRTARQ 10
S+P GS D PP+ N S +T AP P Y S S+ + Q
Sbjct: 208 SSPLGSEDECHPPTSDMQPTHELNESPSTPTAPDFPHYNSSPSELSPTQ 256
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 24.2 bits (50), Expect = 5.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 269 QHRIVRWYHNVPWNRRPYAKGN 204
+H ++R Y WN++ KG+
Sbjct: 556 EHAVIRLYETQSWNQQQVLKGH 577
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 173 NLHCRWGESCDFLLHTVGDSRVHCGTTGQYGVGVQSP 283
N+H GE C +LH GD + G+ + V SP
Sbjct: 82 NVHPN-GEVCISILHPPGDDKYGYEDAGERWLPVHSP 117
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 102 VEREARIDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPG 236
+ + R+DP + ++++F+ R SFCI S+ G
Sbjct: 104 INQNIRLDPKYSIPGVCAVTLIVIMFLAPVGRLFWSFCIVSSFAG 148
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 201 VISFCIRSAIPGYIVVPPDNTVLAY 275
+ +F + A P YI+ P N LAY
Sbjct: 307 LFTFMEKIAFPCYIMFPTHNEALAY 331
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 155 WRSNDLNLHCRWGESCDFLLHTVGDSRVHCGTTGQYGVGVQSP 283
W +N+ + + W ES + L TVG T G Y G P
Sbjct: 318 WSNNNFDAYSYWHESPNMGLGTVGMGNF---TVGNYPEGYFLP 357
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 23.4 bits (48), Expect = 9.0
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -2
Query: 223 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 44
+R+Q + +A T + +I P + ++LA L T S DES P V
Sbjct: 279 NRIQSLVYPIAYKTNENMLICAPTGAGKTDV--ALLAMLQTISNYVESMNLMDESEPLDV 336
Query: 43 HRKCF 29
HR F
Sbjct: 337 HRDDF 341
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 201 VISFCIRSAIPGYIVVPPDNTVLAY 275
+ +F + A P YI+ P N LAY
Sbjct: 307 LFTFMEKIAFPCYIMFPTHNEALAY 331
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 126 DRSSPPSLPSNKCGS 82
D ++PPS+PS+ C S
Sbjct: 81 DINNPPSMPSSVCSS 95
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 201 VISFCIRSAIPGYIVVPPDNTVLAY 275
+ +F + A P YI+ P N LAY
Sbjct: 279 LFTFMEKIAFPCYIMFPTHNEALAY 303
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 120 SSPPSLPSNKCGSRNRSTTSLAPPLYTGSAS 28
SSP PSN S+N + TS++ Y + S
Sbjct: 113 SSPGISPSNDSQSQNTNHTSISANPYVNNPS 143
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 280 TLYANTVLSGGTTMYP 233
T+Y N + G TT+YP
Sbjct: 62 TIYTNGITPGTTTIYP 77
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 183 VDGARAVISFCIRSAIPGYIVVPPDNTVLAYKVLTDVSRR 302
+ G R+VI C+R I Y + PD+ + D+ R
Sbjct: 226 IAGKRSVIEGCLRPRIVLYNEIHPDSESIGSVCSQDLKSR 265
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 200 CDFLLHTVGDSRVHCGTTGQYGVGVQSPY*CF 295
CD++ + +SR++ + +G G + CF
Sbjct: 390 CDYVPNVAKESRINVALSNSFGFGGTNASLCF 421
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 201 VISFCIRSAIPGYIVVPPDNTVLAY 275
+ +F + A P YI+ P N LAY
Sbjct: 307 LFTFMEKIAFPCYIMFPTHNEALAY 331
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 155 WRSNDLNLHCRWGESCDFLLHTVGDSRVHCGTTGQYGVGVQSP 283
W +N+ + + W ES + L TVG T G Y G P
Sbjct: 318 WSNNNFDAYSYWHESPNMGLGTVGMGNF---TVGNYPEGYFLP 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,090
Number of Sequences: 5004
Number of extensions: 31745
Number of successful extensions: 137
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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