Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1863
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             139   7e-36
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  139 bits (337), Expect = 7e-36
 Identities = 70/83 (84%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
 Frame = -2

Query: 325 TYNSHHEVRRETSVRT-LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 149
           TYNS   ++ +  +R  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+
Sbjct: 53  TYNSI--MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEK 110

Query: 148 KYSVWIGGSILASLSTFQQMWIS 80
           KYSVWIGGSILASLSTFQQMWIS
Sbjct: 111 KYSVWIGGSILASLSTFQQMWIS 133



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 132 IHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYIVVPPD 257
           ++    LSGG  +   I D  +  I+    S +   I+ PP+
Sbjct: 68  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 109


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 263 RIVRWYHNVPWNRRPYAK 210
           RI+ +YH+   +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 263 RIVRWYHNVPWNRRPYAK 210
           RI+ +YH+   +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 100 FQQMWISKQEYDESGPSIVHRK 35
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 149 EVLRMDRWIDPRL 111
           E L   +W DPRL
Sbjct: 110 EFLLQQQWYDPRL 122


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 149 EVLRMDRWIDPRL 111
           E L   +W DPRL
Sbjct: 110 EFLLQQQWYDPRL 122


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 149 EVLRMDRWIDPRL 111
           E L   +W DPRL
Sbjct: 161 EFLLQQQWYDPRL 173


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 149 EVLRMDRWIDPRL 111
           E L   +W DPRL
Sbjct: 110 EFLLQQQWYDPRL 122


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 233 WNRRPYAKGNHSSRPIDNE 177
           W R  Y + NH S  +D E
Sbjct: 61  WIRLTYGQTNHISLTLDLE 79


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 233 WNRRPYAKGNHSSRPIDNE 177
           W R  Y + NH S  +D E
Sbjct: 99  WIRLTYGQTNHISLTLDLE 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +3

Query: 108  REARIDPPIHTEYFLSGGAMILIFIVD 188
            R   ++  + ++YF  GG +  I + D
Sbjct: 967  RRLNVNETVCSDYFSQGGVIESIMVSD 993


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 296  TSHFMMGVICG 328
            TSH + G++CG
Sbjct: 1458 TSHELKGLLCG 1468


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 296  TSHFMMGVICG 328
            TSH + G++CG
Sbjct: 1454 TSHELKGLLCG 1464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,846
Number of Sequences: 438
Number of extensions: 2389
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)