Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1860
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +2

Query: 356 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHIRILRTTVRQEPGIGL---KRRHVGTLQEIV 526
           P CC + W+ ++S  R  +++  L YP  I       +  P I +    ++  G +Q   
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSIFRQTDDHQNSPSIFISDDNQKLTGIVQISN 422

Query: 527 RVVVHGQSR*KPGHR*RLS*SPMLK 601
               +G +  K  ++ +LS S M K
Sbjct: 423 MTEYNGLTEPKKDNKRKLSDSTMNK 447


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 434 PYHIRILRTTVRQEPGIGLKRRHVGTLQEIVRVVVHGQ 547
           PY   +L++T  + P I L+      L  +V  + HG+
Sbjct: 55  PYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 141 EGSRHPRPGRKAPRGTP 91
           E  R+P PG K PR  P
Sbjct: 53  EPRRNPGPGSKGPRDFP 69


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 565 ASMKAQLKPDAEALAAAGEGQWGTDESNLQLHPYHSLLSAS 687
           AS+++ L   A A AA    Q     S     P HS  SAS
Sbjct: 37  ASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSAS 77


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 688 SLLIEASDKDEVEDLIRRF 632
           +L+  A+  DEV+ L RRF
Sbjct: 385 TLMFSATFPDEVQHLARRF 403


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 95  VPRGAFRPGRGCRDPSQGYEGLRHR*EGYHRR 190
           +P G F   R  R+    Y GLR   +G   R
Sbjct: 276 LPEGLFASTRDLREIHLAYNGLRDLPKGIFTR 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,851
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)