Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1857
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.32 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.74 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.74 
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   5.2  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.2  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.2  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   6.9  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -2

Query: 454 NDVFGI*HYFILSTVWTLMKLVNINFVHGLV*RRMNRSKPRVGSSYSISALNVCCLFLEV 275
           ND+FGI   F+L   ++ +  VN  ++  L   R  +SK       +IS +++  LF   
Sbjct: 197 NDIFGI--SFLLIISYSTLHFVN--YIDDLFFFRFEKSKFEPFLISNISLVSLIFLFNCT 252

Query: 274 LLICCE 257
           L+I C+
Sbjct: 253 LIIMCD 258


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 437 DPKNVITSSGNK-TALQSPVLGPRQRLTRVTFFGTSWH 547
           +P+N  +  G + T L+   +  +  +TR+   GT WH
Sbjct: 506 NPRNYRSDEGPQITELEPETIESQDAITRIYACGTMWH 543


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 437 DPKNVITSSGNK-TALQSPVLGPRQRLTRVTFFGTSWH 547
           +P+N  +  G + T L+   +  +  +TR+   GT WH
Sbjct: 506 NPRNYRSDEGPQITELEPETIESQDAITRIYACGTMWH 543


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 PTFHSQLYSTVDTSN*FTATLKSHNI 267
           P   SQL ST DT+N    +L  HN+
Sbjct: 9   PPEKSQL-STADTANLINKSLGKHNL 33


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 PTFHSQLYSTVDTSN*FTATLKSHNI 267
           P   SQL ST DT+N    +L  HN+
Sbjct: 9   PPEKSQL-STADTANLINKSLGKHNL 33


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 PTFHSQLYSTVDTSN*FTATLKSHNI 267
           P   SQL ST DT+N    +L  HN+
Sbjct: 9   PPEKSQL-STADTANLINKSLGKHNL 33


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 304 LNVCCLFLEVLLI 266
           LNVCCL L ++ I
Sbjct: 58  LNVCCLNLSIVTI 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,838
Number of Sequences: 336
Number of extensions: 4209
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)