Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1857
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   4.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   4.3  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   4.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.7  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.5  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 625 VKPKSQYDKINKYASIQNKHIMNTSKTSRAGSNS 726
           V PK +  KI K+   +NKH   TS       NS
Sbjct: 595 VSPKGRRKKITKHTKKKNKHASETSVAPEKVDNS 628


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 667 SIQNKHIMNTSKTSRAGSNSRARYTTRR---ASEYSNACTITLL 789
           SI N HI+NT    +   + + RYTT      S+ SN     LL
Sbjct: 125 SIYNPHILNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLL 168


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 692 TRPKPQGLAPTPGLDTLPDGHPNIRTPALLLF*PTIDSILILILTP 829
           +RP    L P P + T     P +  P+L    P++ +IL   L+P
Sbjct: 366 SRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSP 411


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 659 LFILSYCDFGFTRQI*RIVVVGVLHRMRFCVLAG 558
           L + SY D+ F  Q+  I   G+L   R C+ +G
Sbjct: 461 LALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSG 494


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 740 LPDGHPNIRTPALLLF*PTIDSILIL 817
           +P  HP +R P+L    PT + +L+L
Sbjct: 467 VPQNHPVLRAPSLFTDSPTYEDMLLL 492


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 670 IQNKHIMNTSKTSRAGSNSRA 732
           I+NKH  N+SK+SRA  ++ A
Sbjct: 142 IKNKHGKNSSKSSRAAQSAAA 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,030
Number of Sequences: 5004
Number of extensions: 66185
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)