Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1857
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.21 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.49 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   8.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   8.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   8.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 132  DLTVYTVILNFLIKKK*DPRPPNSCSPGDPLVLERPPPR 16
            D T  ++ ++ + +    PR P    PGD  + +RP PR
Sbjct: 895  DPTTVSLAVDTVARSNVTPRSPGRAWPGDSDIRQRPIPR 933


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 779 IVQAFEYSDARRVVYRARELEPALEVLD 696
           +V+AF+Y  +R ++Y  R+L+P   +LD
Sbjct: 475 VVEAFDYLHSRNIIY--RDLKPENLLLD 500


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 394 LVNINFVHGLV*RRMNRSKPR-VGSSYSISALNVC 293
           +VNIN   GL    MNR++P  + S  +++ L  C
Sbjct: 140 IVNINDASGLNLLPMNRNRPAYLASKCALTTLTDC 174


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 459 LVMTFLGSDIILFYRLFG 406
           LVMTF G + +L Y +FG
Sbjct: 77  LVMTFAGVNDLLGYWVFG 94


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 701 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 576
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 701 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 576
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 701 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 576
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/37 (18%), Positives = 18/37 (48%)
 Frame = +3

Query: 669 YTK*THNEHVQNLKGWLQLPGSIHYPTGIRIFERLHY 779
           YT  ++ + +    GW +L   +H+    + +++  Y
Sbjct: 204 YTDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYKKQRY 240


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 453 LQVQETRLHYNLPSSVL 503
           + + +  +HYNLP S L
Sbjct: 589 MSINQAAIHYNLPYSSL 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,055
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)