Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1855
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O81990 Cluster: Putative transcription repressor HOTR; ...    34   2.8  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    34   3.7  

>UniRef50_O81990 Cluster: Putative transcription repressor HOTR;
           n=3; BEP clade|Rep: Putative transcription repressor
           HOTR - Hordeum vulgare (Barley)
          Length = 548

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 276 RKSTEYHVEKKVRILYSRTKSSKHSRSCELVIMFLKSTPQ 395
           RK  E H  ++VR+ YSR K S  S +C++ I  ++S PQ
Sbjct: 321 RKRCELHKGRRVRVAYSR-KVSSSSSTCQVAIPTVESIPQ 359


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 624 FLVILFYCFR*VDELTAHLL*SVYWSP 544
           F +  F   R VDELTAHL+ S YWSP
Sbjct: 149 FCLSRFLLLRWVDELTAHLVLSGYWSP 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,747,133
Number of Sequences: 1657284
Number of extensions: 14493542
Number of successful extensions: 29323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29317
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)