Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1855
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646...    28   6.0  
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           28   7.9  

>12_01_1055 -
           10861665-10861829,10862827-10863171,10864374-10864682,
           10864813-10864968,10865669-10866117,10869275-10869359,
           10869944-10870300,10870672-10871076
          Length = 756

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 62  NPWACGLLPTSADRHVPHTHAPPRCGDFAGGTVHSP 169
           NP  C + P S D  V H H PPR    A     SP
Sbjct: 2   NPLCC-IAPVSLDSAVEHHHQPPRILAAAAAAPTSP 36


>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 97  CRCWEQTAGPRIFRVLP 47
           C  WE   GPR FR+LP
Sbjct: 230 CEDWEAKCGPRSFRLLP 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,655
Number of Sequences: 37544
Number of extensions: 412675
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)