Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1855
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 KSTEYHVEKKVRILYSRTKSSKHSRSCE 362
           K   +HV KK++ L  RT+ SKH R  +
Sbjct: 147 KMPRHHVSKKMKALAKRTEESKHFRCAD 174


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 309 VRILYSRTKSSKHSRSCELVIMFLKSTPQN 398
           V + +S T  S   R C+L+ +F+K  P+N
Sbjct: 334 VFLTHSSTNPSLQERICKLIALFVKKAPEN 363


>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 308 FFFYVIFSGLPLIYITKRNVER 243
           FFF+VIF  L +IY T R V R
Sbjct: 489 FFFFVIFCTLSIIYYTIRTVFR 510


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 204 EMQKDFFYLLFFG-LWTVPPAKSPHLG 127
           EM  DF   LF   +WT P  + PHLG
Sbjct: 111 EMTNDFELELFINEMWTDPSLRFPHLG 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,955
Number of Sequences: 27780
Number of extensions: 353779
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)