Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1852
         (582 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D8A031 Cluster: hypothetical protein, conserved;...    36   0.70 
UniRef50_Q9G8P4 Cluster: ABC transporter subunit; n=1; Naegleria...    33   6.5  
UniRef50_Q4YND5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.6  
UniRef50_A2H7E0 Cluster: Putative uncharacterized protein; n=1; ...    32   8.6  

>UniRef50_UPI0000D8A031 Cluster: hypothetical protein, conserved;
           n=1; Eimeria tenella|Rep: hypothetical protein,
           conserved - Eimeria tenella
          Length = 1486

 Score = 35.9 bits (79), Expect = 0.70
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 360 FNICW-ILFTLIS*LISFITVYFK*LTIYYKLTMYLILKFFYFFLPLAI*ACFCYTYVFR 536
           F+ C+ ++F  I  L SF  V F  L +++       L FFYF L L   +CF  +++F 
Sbjct: 521 FSFCFPLIFLFIFFLFSFCFVLFLFLFVFFFCPFCSFL-FFYFLLFLYSFSCF--SFLFF 577

Query: 537 KRIFFNFISFHFQKF 581
              FF+F  F F  F
Sbjct: 578 LLSFFSFFVFSFFSF 592


>UniRef50_Q9G8P4 Cluster: ABC transporter subunit; n=1; Naegleria
           gruberi|Rep: ABC transporter subunit - Naegleria gruberi
          Length = 210

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 420 YFK*LTIYYKLTMYLILK-FFYFFLPLAI*ACFCYTYVFRKRIFFNFISF 566
           Y K L +Y+    YL+L  FFYF++ L   + F Y Y+    I F  IS+
Sbjct: 4   YLKFLKVYF---FYLLLVLFFYFYISLDYYSKFIYNYILYLHISFIIISY 50


>UniRef50_Q4YND5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 113

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
 Frame = +3

Query: 297 LTISRRLVNLKICTRIKDRYQFNICWILFTLIS*LISF-----ITVYFK*LTIYYKLTMY 461
           L   R +++L +  R+ D     + W  F  +    +F     +  +F   T +Y    +
Sbjct: 5   LNFLRFVLSLLLYLRLSDFVFIYLLWFFFFNLFNFFTFFYFIHVVHFFNFFTFFYLFNFF 64

Query: 462 LILKFFYFFLPLAI*ACFCYTYVFRKRIFFNFISFHF 572
               FF FF        F + + F    FFNF +F +
Sbjct: 65  HFFNFFTFFYLFNFFHFFNFFHFFNFFHFFNFFTFFY 101


>UniRef50_A2H7E0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 239

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 30/127 (23%), Positives = 53/127 (41%)
 Frame = +3

Query: 192 LFITLVEACVLVFLTRFY*FDHIHLFV**NISV*LLTISRRLVNLKICTRIKDRYQFNIC 371
           L + L+ A +      FY     H ++   I + L++IS   V   I T       FNI 
Sbjct: 27  LTLALLSAALFQISPLFYFAIICHSYILRMIDISLISISCCFVVFFILTTAFGLRSFNIL 86

Query: 372 WILFTLIS*LISFITVYFK*LTIYYKLTMYLILKFFYFFLPLAI*ACFCYTYVFRKRIFF 551
            +L  +++ LI+F+  Y+K  ++Y  +++      FY  L + +    C      K  F 
Sbjct: 87  PLLVGIVAGLIAFLQNYYKNASVYLFISI-----GFYSLLAIPVIVSSCIALRSEKSYFH 141

Query: 552 NFISFHF 572
               + F
Sbjct: 142 KLYMYLF 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,597,071
Number of Sequences: 1657284
Number of extensions: 7848987
Number of successful extensions: 14353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14281
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)