Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1852
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   1.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   4.6  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   6.1  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 105 INQYAFFNTLSASVPIFFST*HNVPN 182
           +N +AF NT++++ P+F ST    PN
Sbjct: 99  LNPFAFDNTMNSAPPLFTSTNMGSPN 124


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 366 ICWILFTLIS*LISFITVYFK*LTIYYKLTM-YLILKFFYFFLPLAI 503
           I +ILF + S L+  + VYF   T + ++T  ++ L F    +P+ I
Sbjct: 175 ITYILFWMFSLLVGSLVVYF---TAWRQITFTWITLMFISMIIPIGI 218


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 117 RTDLLKRYNGRETV 76
           R +L+KRYNGRE V
Sbjct: 181 RDELVKRYNGRERV 194


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 12  LYEVRLIDKIRVPSSAFRGKK*QFLSRYNVLINQYAFF 125
           LY +R +  + + SSA +     F S YN+L+    FF
Sbjct: 63  LYILRCMSTVSLLSSAHKMNCCNFYSNYNILLVSSLFF 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,788
Number of Sequences: 5004
Number of extensions: 38540
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)