Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1852
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 297 LTISRRLVNLKICTRIKDRYQFNICWILFTLI 392
           L    R +N   C  + +R +++  WIL TLI
Sbjct: 39  LPTKMRELNATACAALYERVEWSGPWILVTLI 70


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
 Frame = -2

Query: 197 KQTSYVRYVVLRAEK----NRY 144
           ++TSY RY  L  EK    NRY
Sbjct: 11  QRTSYTRYQTLELEKEFHFNRY 32


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 258 YDRTNKSVLERQE 220
           YDR N   LER+E
Sbjct: 245 YDRNNNGNLEREE 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,688
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)