Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1851
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    60   5e-08
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    42   0.019
UniRef50_UPI0000E46C5A Cluster: PREDICTED: similar to p104 chick...    33   6.6  
UniRef50_A5K737 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 33/51 (64%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
 Frame = +2

Query: 2   DFVVP*SXXXXXXXXXK-----TKEIRPTGDTSKEKQNCYFYLIPSIFIFI 139
           DFVVP S         K     TK IR TGDTSKEKQNCYFYLIP IFIFI
Sbjct: 27  DFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 41.5 bits (93), Expect = 0.019
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = -1

Query: 222 LKLENGWTDLANFGLELFDEV 160
           LKLENGWTDLANFGLEL  EV
Sbjct: 20  LKLENGWTDLANFGLELPVEV 40


>UniRef50_UPI0000E46C5A Cluster: PREDICTED: similar to p104 chicken
           Rb, partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to p104 chicken Rb, partial -
           Strongylocentrotus purpuratus
          Length = 774

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 661 PSNIVYEQFESHNCVPQTEI*IRLSEIRPLFAVHTFIR-GVSASDLYLSRFAAEFR 497
           PSN++   FE  +  PQ+ +  R+ +++ LF  H     GV AS+L  +RF    R
Sbjct: 353 PSNVLCSYFEGCSINPQSAVEQRVEKLKELFVGHYVGEVGVQASELACTRFKLGLR 408


>UniRef50_A5K737 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 198

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 423 IKQRIE*E*FRHKHINLISDFCFYLRNSAAKRDKYKSLADTPRINVCT 566
           IK+ IE E    K    IS +C Y++ +    + +K L  TP IN CT
Sbjct: 28  IKKEIE-EGKETKEPEKISTYCEYVKKAIPLYEAFKGLCTTPEINKCT 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,100,210
Number of Sequences: 1657284
Number of extensions: 10816846
Number of successful extensions: 24421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24414
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)