Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1851
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.84 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   5.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.8  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 182  PKLAKSVQPFSSFSETNEQQFIFIYIDFTNI 274
            P+L +S++P+ S  + + Q+FIF  ++F ++
Sbjct: 920  PQLVRSLKPYISVLKQDHQEFIFAGLNFPSV 950


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 688 LCIFLNCTKPSNIVYEQFESHNCVP 614
           + +FL C  PSN++YE  +S++  P
Sbjct: 304 IVMFLYCLPPSNVMYELIKSNSQQP 328


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 453 RHKHINLISDFCFYLRNSA 509
           + ++IN++SD CF L N+A
Sbjct: 101 KERNINVLSDICFPLSNNA 119


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 218 FSETNEQQFIFIYIDFTNIIFLF 286
           FS   E +F+F+ I+ TN  FLF
Sbjct: 478 FSNFKEHKFVFVRIERTNPQFLF 500


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 235 TAIHFYIYRFHQYYFPVLLAHTITLSTLFINLITQA*IEYLKKSIYLFFNKQHF 396
           T + F +      Y  V ++  IT++ L  N+ + A I       YLF + QHF
Sbjct: 471 TVLPFVMTLLRDQYADVRISALITITRLVSNVTSIAPINAFLFQEYLFPDLQHF 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,427
Number of Sequences: 5004
Number of extensions: 51456
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)