Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1849
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -2

Query: 624 HPTWWRSKLFNIKLKSHTSRRFVFTSRPTVIEQNMNVRRSII 499
           H T+   K   + +K+H+    V + R + IE  + + ++ +
Sbjct: 266 HETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSV 307


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
 Frame = -2

Query: 396 DKCFNIV--RWLVSFAIN*ITEVLCACRISNFASILNV-A*ETIYLFI-CLLSSEFFYLF 229
           D  FNI   R  + + +N I   +    +S  A  L   + E I L I  LLS   F+L 
Sbjct: 224 DIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPADSGEKIALCINILLSQTMFFLL 283

Query: 228 KEELVIMFSYYI*MLPNFSTISPLTISFKTLV*FVVYKL*YIK 100
             E++   S  + +L  +   + + +    ++  V+  + Y K
Sbjct: 284 ISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYRK 326


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 326 HAGYLILHQSSMWPEKLFIYLFVY 255
           H GYLI   +  +   LF+ +F Y
Sbjct: 203 HLGYLIFSSTISFYLPLFVMVFTY 226


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 438 SIRVTTSLVVIFRLDKC 388
           +IR+   L ++F  DKC
Sbjct: 6   TIRIAVLLAIVFLFDKC 22


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 623 IRPGGVRNYLT 591
           I P G+RNYLT
Sbjct: 331 ILPDGIRNYLT 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,951
Number of Sequences: 438
Number of extensions: 2726
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)