Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1847
(751 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT t... 64 3e-09
UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Hom... 64 5e-09
UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-... 52 2e-05
UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ... 48 2e-04
UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3; ... 46 0.001
UniRef50_Q20497 Cluster: Putative uncharacterized protein dpy-22... 38 0.35
UniRef50_A4X4V1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_Q623D7 Cluster: Putative uncharacterized protein CBG019... 37 0.61
UniRef50_A6EGL2 Cluster: Sensor protein; n=1; Pedobacter sp. BAL... 34 3.3
UniRef50_Q11U36 Cluster: Probable 2-hydroxy-6-ketonona-2,4-diene... 33 7.5
UniRef50_Q63P31 Cluster: Sensor protein; n=10; pseudomallei grou... 33 9.9
UniRef50_Q962P2 Cluster: Chitinase Jessie 3; n=6; Entamoeba|Rep:... 33 9.9
>UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT
transcription complex, subunit 1 isoform a; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CCR4-NOT
transcription complex, subunit 1 isoform a - Tribolium
castaneum
Length = 2347
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +2
Query: 245 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLT 403
MNLDSL+ +LS I YLV +L KKN+KQ EL+++V+++GLEA+ +L+CL +
Sbjct: 1 MNLDSLSFTLSQISYLVASLTKKNYKQVVAELSKLVTLHGLEADRHLLQCLFS 53
>UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Homo
sapiens (Human)
Length = 2371
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +2
Query: 245 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW 424
MNLDSL+L+LS I YLV NL KKN++ + QE+ IV+ +G EA+ +LRCL + + +
Sbjct: 1 MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDF 57
Query: 425 DGDRTTS 445
GD +S
Sbjct: 58 SGDGKSS 64
>UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-PA
- Drosophila melanogaster (Fruit fly)
Length = 301
Score = 52.0 bits (119), Expect = 2e-05
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Frame = +2
Query: 245 MNLDS-LTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIA 421
MN++S L +HI LV ++NK+NF ++S+++NQ V +GLEA+ LR L + +
Sbjct: 1 MNVESQLKTPPTHIRNLVKHVNKRNFNESSEQINQFVKEHGLEADRSSLRHLFS----VI 56
Query: 422 WDGDRTTSAATNSIHASLLGQQVGRLAQSSS*INS 526
D S T + A LLG Q+ R SSS +++
Sbjct: 57 NFSDLVPS-VTVQLQAKLLGIQLERQLHSSSFVSN 90
>UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 2363
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 251 LDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTE 406
+D+L+LSL I + V L+KKNFK T E+++++ +G EAE R L ++
Sbjct: 5 VDALSLSLKQISFAVTELSKKNFKSTVAEIHELIEKHGFEAECHFFRVLFSQ 56
>UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3;
Dictyostelium discoideum|Rep: CCR4-Not complex
component, Not1 - Dictyostelium discoideum AX4
Length = 2526
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +2
Query: 275 SHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWDGDRTTSAAT 454
+ I L+ NL KK++K S EL+QI++ YG +AE + RCL+ + TTS T
Sbjct: 98 TQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVDSIDFKNTNTPITTSPTT 157
Query: 455 NS 460
S
Sbjct: 158 TS 159
>UniRef50_Q20497 Cluster: Putative uncharacterized protein dpy-22;
n=1; Caenorhabditis elegans|Rep: Putative uncharacterized
protein dpy-22 - Caenorhabditis elegans
Length = 3498
Score = 37.5 bits (83), Expect = 0.35
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Frame = +1
Query: 133 LSFRQKTTKE--HKFVVENHKKSRKLQTCLKLSFLH*WNYEPGLFNVELIAYTLS----R 294
++ R++T +E HK + E HK S+K LSF++ WN+ LF++ L+ +S
Sbjct: 1734 MALRRRTERENVHK-LFEAHKISKKATVDKVLSFMNLWNFRATLFDLMLMIKEISPDGNS 1792
Query: 295 RKFKQEKFQADE--SRIESDCQCLWLGSRESSFKM 393
R +Q AD S I C+ ++L + ++ KM
Sbjct: 1793 RHAQQGAIAADALMSEIGKCCRDMFLSAYKTKIKM 1827
>UniRef50_A4X4V1 Cluster: Putative uncharacterized protein; n=1;
Salinispora tropica CNB-440|Rep: Putative
uncharacterized protein - Salinispora tropica CNB-440
Length = 3437
Score = 36.7 bits (81), Expect = 0.61
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +2
Query: 272 LSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWDGDRTTSAA 451
LS V+ + +K F S ++ I G++A QV + L + R+ WD ++T AA
Sbjct: 141 LSATRVTVLQIIQKMFTAISVIVSSIAMQVGMDAFAQVTQIL--KGTRVNWDSNKTEQAA 198
Query: 452 TNSIHASLLGQQVGRLAQSSS*INSCLPGC*SSNTL 559
++G +G+LA + ++ L G +S L
Sbjct: 199 VAGTLGGVVGLGLGKLADITPRMSQTLLGQMASGAL 234
>UniRef50_Q623D7 Cluster: Putative uncharacterized protein CBG01900;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG01900 - Caenorhabditis
briggsae
Length = 3941
Score = 36.7 bits (81), Expect = 0.61
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Frame = +1
Query: 103 IKLVMLGLGLL--SFRQKTTKEHKF-VVENHKKSRKLQTCLKLSFLH*WNYEPGLFNVEL 273
+K LG LL S R+KT + + + E HK S+K LSF++ WN+ LF++ L
Sbjct: 2026 LKTNCLGQQLLRISLRRKTERSNVHSLFEAHKISKKATVDKVLSFMNLWNFRATLFDLML 2085
Query: 274 IAYTLS----RRKFKQEKFQADE--SRIESDCQCLWLGSRESSFKM 393
+ +S R +Q AD S I C+ ++L + ++ KM
Sbjct: 2086 MIKEISPDGNTRHAQQGAIAADALMSEIGKCCRDMFLAAYKADAKM 2131
>UniRef50_A6EGL2 Cluster: Sensor protein; n=1; Pedobacter sp.
BAL39|Rep: Sensor protein - Pedobacter sp. BAL39
Length = 456
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -3
Query: 746 VLNPKDSFLQSVALAXGNYSHFFVESLLKSQNEKATSSAVVNFNSLDSRFNSAFVGFNSF 567
VL P D F+ VA + HF V+ + QN+ + NFNSL AFV +F
Sbjct: 178 VLKPLDLFIGEVAQIKSSNLHFRVQ---EGQNKDEINLLAQNFNSLMEHLEQAFVLQKTF 234
Query: 566 CYRACWMINSP 534
A + +P
Sbjct: 235 IANASHELRTP 245
>UniRef50_Q11U36 Cluster: Probable
2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: Probable
2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 263
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 236 NGTMNLDSLTLSLSHIHYLVVNLNKKNFKQTSQEL-NQIVSVYGLEAENQVLRCLLTEAA 412
+GTM D L ++++H LV L + F L Q+ +Y + +V+R +LT +A
Sbjct: 60 DGTMQKDGLDGLVTYLHELVTELKIERFNLVGNSLGGQVAILYSVAYPEKVIRLVLTGSA 119
>UniRef50_Q63P31 Cluster: Sensor protein; n=10; pseudomallei
group|Rep: Sensor protein - Burkholderia pseudomallei
(Pseudomonas pseudomallei)
Length = 1014
Score = 32.7 bits (71), Expect = 9.9
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 263 TLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVL-RCLLTEAARIAWDGDRT 439
T +L I + L +NF+ QEL+ I + L ++ RC TE A D D T
Sbjct: 937 TATLQSIDKIAQALAARNFETIRQELHSIKGGFALTGNRLLIARCAATEELAEAEDLD-T 995
Query: 440 TSAATNSIHASLL 478
AA + ASLL
Sbjct: 996 LRAAWRKLEASLL 1008
>UniRef50_Q962P2 Cluster: Chitinase Jessie 3; n=6; Entamoeba|Rep:
Chitinase Jessie 3 - Entamoeba histolytica
Length = 621
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 411 QG*LGTETVQLLQLLIASTPPFLDNKLAGLLNHPAKSTVVCRAVDHPTRSVTKAIKAYKC 590
+G T+ +Q+L A P D KL G H +VC+AVD K
Sbjct: 440 RGVFDTQLIQMLNGCNADMDPCTDCKLDGYGGHTTDIRIVCKAVDSVPNKEVYDYNLSKE 499
Query: 591 TIESTI*TVEVNY 629
+E I T++ Y
Sbjct: 500 DVEYFISTIQSTY 512
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,472,053
Number of Sequences: 1657284
Number of extensions: 12599052
Number of successful extensions: 32049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32042
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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