Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1847
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    29   0.71 
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   2.9  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   2.9  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 686 HFFVESLLKSQNEKATSSAVVNFNSLDSRFNSAFVGFNSF 567
           ++ +  +LK+QNEK  S      N LD RF S FV    F
Sbjct: 296 NYCISYILKNQNEKIVSITSKLLNQLDKRF-SEFVSLFGF 334


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 668 LLKSQNEKATSSAVVNFNSLDSRFNSAFVGFNS 570
           LL+ + E    S    FNS+D RFNS    F+S
Sbjct: 174 LLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDS 206


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 668 LLKSQNEKATSSAVVNFNSLDSRFNSAFVGFNS 570
           LL+ + E    S    FNS+D RFNS    F+S
Sbjct: 174 LLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDS 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,381
Number of Sequences: 5004
Number of extensions: 57844
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)