Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1847
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    31   0.74 
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    30   2.3  
05_01_0358 + 2808627-2809847                                           28   6.9  
01_04_0110 - 16118497-16118637,16119868-16120008,16121154-161212...    28   6.9  
01_06_1806 + 40012952-40016836                                         28   9.1  

>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
            161530-161675,161918-161965,162054-162203,165647-165706,
            165788-165859,165960-166409,166640-166839,167239-168236,
            168676-168683,169057-169230,169341-169659,169748-169824,
            169897-169966,170040-170111,170204-170418,170540-170665,
            170751-171046,171133-171157,171163-171303,171400-171498,
            171571-171702,171793-171912
          Length = 1407

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 733  KILFFKVLLWQXATILTFLLNPFSRAKMKRQHP 635
            KILFF   L +  T+L++++N F R      HP
Sbjct: 1246 KILFFGQSLMKGGTVLSYVINVFCRVLFNNNHP 1278


>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 54  IAEWGDNNYVVFIKVNNKIGDVGLRFIIISSENYQRTQVRRRKS*KIEK 200
           I  W D+N +VF     K G  G   II +  NY+   V  R+   +EK
Sbjct: 73  IGSWEDSNSIVFSTSTGKSGAHGNDDIIATLSNYESQLVAPREMAGVEK 121


>05_01_0358 + 2808627-2809847
          Length = 406

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 501 ASLPTCCPRREAWMLLVAAEVVRSPSQAILAASVRR 394
           A LP CC     W+ L  A+  RSP++ +L   V R
Sbjct: 96  AGLPYCCGTPRGWLAL--ADAPRSPTRLVLWEPVSR 129


>01_04_0110 -
           16118497-16118637,16119868-16120008,16121154-16121256,
           16122541-16122605
          Length = 149

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 302 LNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARI 418
           L KKN+    QE N I S   + AEN    CL TE  R+
Sbjct: 72  LKKKNYAIKLQEFNSICSTCHMRAEN---ACLGTEIQRL 107


>01_06_1806 + 40012952-40016836
          Length = 1294

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 466 RLPSWTTSWQACSIIQLNQQLFAG---LLIIQHAL 561
           R+P W   W+    I+L Q  F+G   +L +QH L
Sbjct: 392 RVPDWIQKWKNARSIRLGQNKFSGPLPVLPLQHLL 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,479,864
Number of Sequences: 37544
Number of extensions: 322173
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)