Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1847
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein pr...    64   7e-10
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ...    64   7e-10

>BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein
           protein.
          Length = 2150

 Score = 63.7 bits (148), Expect = 7e-10
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +2

Query: 245 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW 424
           MNLDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + +
Sbjct: 1   MNLDSLSLALSQISYLVGNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDF 57

Query: 425 DGDRTTS 445
            GD  +S
Sbjct: 58  SGDGKSS 64


>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
           complex, subunit 1 protein.
          Length = 1551

 Score = 63.7 bits (148), Expect = 7e-10
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +2

Query: 245 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW 424
           MNLDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + +
Sbjct: 1   MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDF 57

Query: 425 DGDRTTS 445
            GD  +S
Sbjct: 58  SGDGKSS 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,730,982
Number of Sequences: 237096
Number of extensions: 1814458
Number of successful extensions: 3166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3166
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)