Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1847
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    38   0.010
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
 Frame = +1

Query: 133  LSFRQKTTKE--HKFVVENHKKSRKLQTCLKLSFLH*WNYEPGLFNVELIAYTLS----R 294
            ++ R++T +E  HK + E HK S+K      LSF++ WN+   LF++ L+   +S     
Sbjct: 1734 MALRRRTERENVHK-LFEAHKISKKATVDKVLSFMNLWNFRATLFDLMLMIKEISPDGNS 1792

Query: 295  RKFKQEKFQADE--SRIESDCQCLWLGSRESSFKM 393
            R  +Q    AD   S I   C+ ++L + ++  KM
Sbjct: 1793 RHAQQGAIAADALMSEIGKCCRDMFLSAYKTKIKM 1827


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 TMNLDSLTLSLSHIHYLVVNL 304
           T+NLD ++L L+H+ YL+ NL
Sbjct: 433 TVNLDHMSLFLTHLKYLLDNL 453


>U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical
           protein F22H10.6 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 230 CINGTMNLDSLTLSLSHIHYLVVNLNKKNFKQTS 331
           C   +     + LS  ++HY   NL+ +NFK +S
Sbjct: 2   CFKDSKIASKIPLSSKYMHYFSSNLHSQNFKSSS 35


>U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical
           protein F22F4.5 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 432 TVQLLQLLIASTPPFLDNKLAGLLNHPAKSTVVCRAVDHPTRSVTKAIKAYKCTIESTI* 611
           TV +  L+  S   F+DN L   + H  K T+      HP R++   I      I+  I 
Sbjct: 5   TVVVPDLIRYSKDYFMDNSLFQQIEHVRKGTLPAAVGPHPIRTMVDGIDYCATAIQVPIT 64

Query: 612 T 614
           T
Sbjct: 65  T 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,505
Number of Sequences: 27780
Number of extensions: 310829
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)