Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1847
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 165 QVRRRKS*KIEKASNVFEAFVFALMEL*TWTL 260
           Q  R ++  I++ S VF  F+FA++ +  W +
Sbjct: 392 QKARMRALNIDRVSRVFFPFLFAVLNVTYWIM 423


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/42 (21%), Positives = 18/42 (42%)
 Frame = +3

Query: 474 FLDNKLAGLLNHPAKSTVVCRAVDHPTRSVTKAIKAYKCTIE 599
           FLD  L+G  N P K+    +   H        ++ ++  ++
Sbjct: 234 FLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 286 LSRRKFKQEKFQADESRIESDCQCLW 363
           ++ ++F Q KFQA++ + +     LW
Sbjct: 275 VNTKQFTQGKFQANDIQYQGASDILW 300


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/42 (21%), Positives = 18/42 (42%)
 Frame = +3

Query: 474 FLDNKLAGLLNHPAKSTVVCRAVDHPTRSVTKAIKAYKCTIE 599
           FLD  L+G  N P K+    +   H        ++ ++  ++
Sbjct: 234 FLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 460 HPRLPSWTTSWQACSIIQLNQQLFAGLLIIQHAL 561
           HP        W  C +I  + Q F   L  +H L
Sbjct: 275 HPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHTL 308


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 299 NLNKKNFKQTSQELN 343
           N +KK F+QT  ELN
Sbjct: 43  NKSKKYFEQTLNELN 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,334
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)