Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1846
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    27   1.6  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    26   4.9  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   8.5  

>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -1

Query: 285 TVDTQYLYINTSSKNFVSLFTKIARTEEYEIFHTYREYREEVHNVN 148
           T++  Y  + +   NF S+F +  + E  ++ +   EY  ++  +N
Sbjct: 8   TIELDYDSLKSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLSEIN 53


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 430 RNSRGGGTYPRGLTRSSTTSNY 365
           ++S GG  + RG TRSS +S+Y
Sbjct: 227 KSSGGGSRFGRGPTRSSHSSDY 248


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -3

Query: 394 LTRSSTTSNYANYNFTWQERSLEMHWAFTPNC*NCANS 281
           L   S   N     FTW  R     W     C NC NS
Sbjct: 26  LDDESAQCNNCGGPFTWFRRRHHCRWCGKLFCYNCCNS 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,189
Number of Sequences: 5004
Number of extensions: 51879
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)