Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1845
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...   112   4e-26
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    62   5e-11
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    49   7e-07
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    37   0.003
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    34   0.016
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    31   0.11 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.44 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    29   0.77 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    28   1.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.2  

>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score =  112 bits (270), Expect = 4e-26
 Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
 Frame = +3

Query: 276 AVYTANTALGDMK---DISGAMPDAYSPRYVEAAWYAWWEKQGFFKPEYGRKSILDPNPK 446
           A Y   T  G+ K   D+      +Y+P+ VE+AWY WW K GFF+PE+G      P  +
Sbjct: 72  AEYVEKTTPGEKKVLQDLDSPALKSYNPKAVESAWYDWWVKSGFFEPEFGPDG--KPKKE 129

Query: 447 GNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPGL*PCRNCSQVVVE 623
           G FV+  PPPNVTG LH+GHALT A++D+L RW+RM G+T L+  G       +Q VVE
Sbjct: 130 GVFVITSPPPNVTGALHIGHALTIAIQDSLARWNRMLGKTVLFLGGFDHAGLSTQSVVE 188


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
 Frame = +3

Query: 417 RKSILDPNPKG----NFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPG 584
           RK I  P PK      F +++PPPN+TG LH+GHALT  ++DAL R++ M+G    + PG
Sbjct: 44  RKHIHYPKPKSIEAPMFPILLPPPNITGKLHIGHALTITIQDALARFYAMHGYKVSFRPG 103

Query: 585 L*PCRNCSQVVVE 623
                  +Q VVE
Sbjct: 104 TDHAGIATQSVVE 116


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 438 NPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPG 584
           N + +FV++  PP   G LH+GHAL   ++D + RW  + GR+  + PG
Sbjct: 75  NKEDSFVLLDGPPFANGRLHIGHALNKILKDIINRWQLLKGRSVHYVPG 123


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 465 IPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPG 584
           +P P + G LHLGHA T +  +  T + R+NG+  L+  G
Sbjct: 71  MPYPYMNGALHLGHAFTLSKVEFTTAFERLNGKRVLFPMG 110


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 369 WYAWWEKQ-GFFKPEYGRKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRW 545
           W ++W+    F K + G+K  +        + + P P+  G LH+GH     + D L+R+
Sbjct: 41  WKSYWKSHYPFVKNDKGKKKYI--------LSMFPYPS--GLLHIGHVRVYTISDILSRY 90

Query: 546 HRMNG 560
           +RM G
Sbjct: 91  YRMKG 95


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 471 PPNVTGTLHLGHALTNAVEDALTRWHRMNG 560
           PP  TG  H GH L + ++D++TR+  + G
Sbjct: 41  PPFATGRPHHGHLLASTIKDSVTRYACLKG 70


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 533  CIFNGVGQC-MSKMQCSSDI 477
            C FNG+G+C +   QC+SDI
Sbjct: 1856 CSFNGIGECNLHMQQCASDI 1875


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 447 GNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWH 548
           G  V+   PP   G LH+GH+   AV     R+H
Sbjct: 260 GGGVVTRFPPEPNGYLHIGHSKAIAVNFGFARYH 293


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +3

Query: 279 VYTANTALGDM---KDISGAMPDAYSPRYVEA--AWYAWW 383
           ++T   ALG+M     +SGA P  Y  RYV+A  A+ A W
Sbjct: 87  IWTVMNALGEMCTYLPLSGASPITYIERYVDASLAFAAGW 126


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 484 VTLGGGITITKLPFGLGSNIDF 419
           +TL   I  T+ P G   N+DF
Sbjct: 317 ITLSSSIEFTEFPLGFNENVDF 338


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 469 GITITKLPFGLGSNIDFLPYSGL 401
           G  +T LPFG GSN      SGL
Sbjct: 254 GAQVTYLPFGAGSNAQSSSGSGL 276


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 563 YNTLESWFVTMPELLTSCGRKEA 631
           Y TL SW   +P LL   GR  A
Sbjct: 817 YGTLSSWISKLPGLLREIGRLAA 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,550
Number of Sequences: 5004
Number of extensions: 51428
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)