Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1845
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...   136   1e-32
U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna synt...    67   9e-12
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    34   0.077
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    34   0.077
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    34   0.077
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    30   1.6  
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...    29   2.2  
AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score =  136 bits (329), Expect = 1e-32
 Identities = 63/117 (53%), Positives = 77/117 (65%)
 Frame = +3

Query: 273 AAVYTANTALGDMKDISGAMPDAYSPRYVEAAWYAWWEKQGFFKPEYGRKSILDPNPKGN 452
           AA     T  G  K I G +P AY P YVE+ WY+WWEK+GFFKPEY  K     NP  +
Sbjct: 60  AAEPVDQTPTGQRKKIDGEIPAAYFPGYVESGWYSWWEKEGFFKPEYIDKLNPGSNPADS 119

Query: 453 FVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPGL*PCRNCSQVVVE 623
           F + IPPPNVTG LH+GHAL   VED +TR++RM+G+ TL+NPG       +QVVVE
Sbjct: 120 FTVCIPPPNVTGNLHVGHALATTVEDTITRFNRMHGKRTLFNPGCDHAGIATQVVVE 176


>U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna
           synthetase protein 1 protein.
          Length = 918

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 33/55 (60%), Positives = 36/55 (65%)
 Frame = +3

Query: 459 MVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPGL*PCRNCSQVVVE 623
           MV+PPPNVTG LHLGHALT AVEDA+ R  R  G    W PG       +QVVVE
Sbjct: 1   MVLPPPNVTGKLHLGHALTVAVEDAICRHQRNQGNKAEWIPGFDHAGIATQVVVE 55


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 417 RKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNG 560
           ++S+     + +F     PP  TG  H GH LT+ ++D + RW   NG
Sbjct: 31  QRSVELSKDRPHFTFYDGPPFATGLPHYGHMLTSTIKDVVGRWAHQNG 78


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 381 WEKQGFFKPEYGRKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNG 560
           W K      E  +    + N K   + + P P+  G LH+GH     + DA  R++R+NG
Sbjct: 6   WSKSLVDSFESSKNKPSNLNGKKYILSMFPYPS--GRLHIGHMRVYTISDATARYYRLNG 63


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 381 WEKQGFFKPEYGRKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNG 560
           W K      E  +    + N K   + + P P+  G LH+GH     + DA  R++R+NG
Sbjct: 37  WSKSLVDSFESSKNKPSNLNGKKYILSMFPYPS--GRLHIGHMRVYTISDATARYYRLNG 94


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 381 WEKQGFFKPEYGRKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNG 560
           W K      E  +    + N K   + + P P+  G LH+GH     + DA  R++R+NG
Sbjct: 6   WSKSLVDSFESSKNKPSNLNGKKYILSMFPYPS--GRLHIGHMRVYTISDATARYYRLNG 63


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 453 FVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPG 584
           F ++  PP   G  H GHA+   ++D + +     G   L+ PG
Sbjct: 89  FELLDGPPYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPG 132


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 453 FVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPG 584
           F ++  PP   G  H GHA+   ++D + +     G   L+ PG
Sbjct: 89  FELLDGPPYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPG 132


>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 444 KGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLW 575
           K  +++  P P + G LHLGH  + +  +    + R+ G+  L+
Sbjct: 40  KPKYLVTFPFPYMNGRLHLGHTFSASKCEFAAGFQRLQGKEVLF 83


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 444 KGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLW 575
           K  +++  P P + G LHLGH  + +  +    + R+ G+  L+
Sbjct: 40  KPKYLVTFPFPYMNGRLHLGHTFSASKCEFAAGFQRLQGKEVLF 83


>AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical
           protein C01B4.7 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 130 CG*SSPVFWDSLSVIFTIVI*VIHSELQFSSTQQLQNY 17
           C  ++P  W  L +I T+++ + ++   + +TQQ  NY
Sbjct: 426 CPDNTPDQWSRLFIIITLIMIITNAPFPWLTTQQAANY 463


>AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical
           protein Y19D10A.4 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 130 CG*SSPVFWDSLSVIFTIVI*VIHSELQFSSTQQLQNY 17
           C  ++P  W  L +I T+++ + ++   + +TQQ  NY
Sbjct: 426 CPDNTPDQWSRLFIIITLIMIITNAPFPWLTTQQAANY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,909
Number of Sequences: 27780
Number of extensions: 304528
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)