Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1843
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2G3H1 Cluster: Putative uncharacterized protein; n=1; ...    37   0.52 
UniRef50_Q4N7X6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q229I1 Cluster: Putative uncharacterized protein; n=2; ...    33   6.4  
UniRef50_P15305 Cluster: Dynein heavy chain; n=2; root|Rep: Dyne...    33   6.4  

>UniRef50_A2G3H1 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1232

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +3

Query: 57  ICD*NVPFLSRPYKRSNVLVIQFQYSIRYDKYIKNAIQFNSIQCMYNLL*IEREIVVSNL 236
           +CD N P LS   K SN L +  +Y    + +I++  +   I+ +  L+ IE+ +++SNL
Sbjct: 731 LCDMNFPLLSNFIKNSNFLYLD-EYKEPLEMFIRDNCKPKDIRSL--LIRIEKLLIISNL 787

Query: 237 VVCT 248
           V C+
Sbjct: 788 VSCS 791


>UniRef50_Q4N7X6 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1506

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = -1

Query: 469 WPILIDTG*AQKISSKSVKPFRRSMATKTVTREF---YILDIERH*FAREQNKRVSNKSN 299
           +P+++ TG  + I+ + V  FR+ +    + R F   Y+ D+    F +   K +++ SN
Sbjct: 247 YPVIL-TGKEKTIACRIVDHFRQIVCGFDILRTFDGPYVCDVNGWSFVKRNQKYLTDCSN 305

Query: 298 ILFNLYTIILNEIYNTHVHTTRFETTISRSIYNKLY 191
           IL  +  + L   YN  +     E T+   +  K +
Sbjct: 306 ILRIILLLKLQSKYNVVIGNIVKERTVGEEVIKKTF 341


>UniRef50_Q229I1 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 845

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 444 YPVSMRIGQHLF-FIPLNVRGSPTLNFYFLFLDKIFNFYFFMI 569
           + + + I  +LF FI  N+  +  LNFYF FL  + +F FF+I
Sbjct: 63  FQIEIHINIYLFIFIQTNIFLAINLNFYFHFLFFLIHFLFFLI 105


>UniRef50_P15305 Cluster: Dynein heavy chain; n=2; root|Rep: Dynein
           heavy chain - Oncorhynchus mykiss (Rainbow trout) (Salmo
           gairdneri)
          Length = 515

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +1

Query: 130 IPYVMISILKTLFNSIQFNVCIICCK*NEKLLSRTLLYVHEYCKFHLI*WYIN*IKCWIY 309
           I Y ++ +++   + IQ+++ +I  + +  ++  ++L+V +Y   H+I + I+ I+  I+
Sbjct: 244 IQYSILHVIQYSIHVIQYSIHVI--QYSIHVIQYSILHVIQYSILHVIQYSIHVIQYSIH 301

Query: 310 LIPVYFVHVQISDALYLI-YKILVSQFSL 393
           +I  Y +HV     L++I Y I V Q+S+
Sbjct: 302 VIQ-YSIHVIQYSILHVIQYSIHVIQYSI 329


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,576,122
Number of Sequences: 1657284
Number of extensions: 11881921
Number of successful extensions: 26936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26906
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)