Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1843
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.3  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   3.3  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.7  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    25   7.7  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 63  D*NVPFLSRPYKRSNVLVIQFQYSIRYDKYIKNAIQ--FNSIQCMYNLL 203
           D ++ +LS+P +  N L I F   + Y+K ++N I+     I  +Y LL
Sbjct: 115 DNSLAYLSKPEESYNFLTIYFSTLLSYEK-VENLIKKSLTVIDSLYGLL 162


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 319 RVSNKSNILFNLYTIILNEIYNTH--VHTTRFETTISRSIYNKLYI 188
           R+  K  +  N ++ ILN +Y T   V+T    T++S +I +  ++
Sbjct: 30  RLDQKVQLFLNEHSSILNAVYETTTIVYTEPLHTSVSETITSTSFV 75


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 439 QKISSKSVKPFRRSMATKTVTREFYILDIERH*FAREQNKRVSNKSNILFNLYTIILNEI 260
           Q + S +     +    KTV R+  I+D      +++  K++++ S+I   L     + +
Sbjct: 339 QVVESATAPQQEKINPQKTVRRQRAIIDPVTELSSKQMKKQLADTSSITSPLCLNTSSIV 398

Query: 259 YNTHVHTTR---FETTISRSIYN 200
           +N  V+ TR   F T+I  S  N
Sbjct: 399 FNATVNFTRNGKFNTSIFSSNLN 421


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 61  VIEMCLFFHDLINVPTC**SNFNIPY 138
           VIE+ LF HD      C  +N  IPY
Sbjct: 30  VIELGLFMHDCEGEMVCQSTNVKIPY 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,712
Number of Sequences: 5004
Number of extensions: 56372
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)