Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1843
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.88 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.2  

>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 480 FIPLNVRGSPTLNFYFLFLDKIFNFYFFMIQHTKIHT--ILNFHSST 614
           F+ L     PT +     +   FN   FM+  + + T  +LNFH  T
Sbjct: 307 FLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLNFHHRT 353


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -1

Query: 508 GLPLTFRGMKNRC-----WPILIDTG*AQKISSKSVKPFRRSMATKTVTREFYILDIER 347
           GLP TFR  KN       +PI +  G    I  KS K    S  T    R F  LD  R
Sbjct: 513 GLPFTFREQKNLMIELDKFPITLQPG-KNTIEQKSTK----SSVTIPFERTFRNLDENR 566


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 263 NLQYSCTYNKVRDNNFSFYLQQIIHTLN 180
           N  Y+  YN   +NN++ Y +   + +N
Sbjct: 331 NNNYNNNYNNYNNNNYNNYKKLYYNIIN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,187
Number of Sequences: 438
Number of extensions: 4803
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)