Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1841
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39817-1|AAA87850.1| 1417|Homo sapiens Bloom's syndrome protein ...    30   9.0  
L32611-1|AAL31359.1|  691|Homo sapiens ribonucleoprotein protein.      30   9.0  
BC115032-1|AAI15033.1| 1417|Homo sapiens Bloom syndrome protein.       30   9.0  
BC115030-1|AAI15031.1| 1417|Homo sapiens Bloom syndrome protein.       30   9.0  
BC101567-1|AAI01568.1| 1417|Homo sapiens Bloom syndrome protein.       30   9.0  
BC093622-1|AAH93622.1| 1417|Homo sapiens Bloom syndrome protein.       30   9.0  
AY886902-1|AAW62255.1| 1417|Homo sapiens Bloom syndrome protein.       30   9.0  

>U39817-1|AAA87850.1| 1417|Homo sapiens Bloom's syndrome protein
            protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


>L32611-1|AAL31359.1|  691|Homo sapiens ribonucleoprotein protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 211 CGKCTEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGKH--RADFDKFLLGS*IFINKL 384
           C     K + +++K  +V+  KHS     L  K DP G+H  RA      LGS +F+  L
Sbjct: 114 CAVVEFKMEESMKKAAEVLN-KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANL 172


>BC115032-1|AAI15033.1| 1417|Homo sapiens Bloom syndrome protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


>BC115030-1|AAI15031.1| 1417|Homo sapiens Bloom syndrome protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


>BC101567-1|AAI01568.1| 1417|Homo sapiens Bloom syndrome protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


>BC093622-1|AAH93622.1| 1417|Homo sapiens Bloom syndrome protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


>AY886902-1|AAW62255.1| 1417|Homo sapiens Bloom syndrome protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 172  DFKKALPDTIATNCGKC----TEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGK 327
            DF K  PD    NC K     T     +V+ +++ +Q+  S++  + +K   PSG+
Sbjct: 1053 DFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGR 1108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,818,310
Number of Sequences: 237096
Number of extensions: 1666871
Number of successful extensions: 3427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3423
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)